Hdac9 (histone deacetylase 9) - Rat Genome Database

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Gene: Hdac9 (histone deacetylase 9) Mus musculus
Analyze
Symbol: Hdac9
Name: histone deacetylase 9
RGD ID: 1614254
MGI Page MGI
Description: Enables DNA-binding transcription factor binding activity and transcription corepressor activity. Acts upstream of or within several processes, including determination of adult lifespan; negative regulation of transcription by RNA polymerase II; and regulation of skeletal muscle fiber development. Part of histone methyltransferase complex. Is expressed in several structures, including 2-cell stage embryo; genitourinary system; heart; nervous system; and trunk myotome. Orthologous to human HDAC9 (histone deacetylase 9); PARTICIPATES IN histone modification pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,3',5,5'-tetrabromobisphenol A; 3,4-methylenedioxymethamphetamine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: AV022454; D030072B18Rik; HD; HD7B; HD9; Hdac7; Hdac7b; HDRP; histone deacetylase 7B; histone deacetylase-related protein; MEF2-interacting transcription repressor MITR; Mi; Mitr; mKIAA0744; RIKEN cDNA D030072B18 gene
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391234,097,579 - 34,967,094 (-)NCBIGRCm39mm39
GRCm39 Ensembl1234,097,579 - 34,967,094 (-)Ensembl
GRCm381234,047,580 - 34,917,095 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1234,047,580 - 34,917,095 (-)EnsemblGRCm38mm10GRCm38
MGSCv371235,056,362 - 35,213,754 (-)NCBIGRCm37mm9NCBIm37
MGSCv361234,956,744 - 35,114,121 (-)NCBImm8
Celera1235,799,634 - 35,959,002 (-)NCBICelera
Cytogenetic Map12A3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
17beta-estradiol  (ISO)
17beta-estradiol 3-benzoate  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3,3',5,5'-tetrabromobisphenol A  (EXP)
3,4-methylenedioxymethamphetamine  (EXP)
3,5-diethoxycarbonyl-1,4-dihydrocollidine  (EXP)
5-aza-2'-deoxycytidine  (EXP)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (ISO)
acetamide  (ISO)
acrylamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
antirheumatic drug  (ISO)
aristolochic acid  (ISO)
arsenite(3-)  (EXP)
benzo[a]pyrene  (EXP,ISO)
benzo[e]pyrene  (ISO)
berberine  (ISO)
bis(2-chloroethyl) sulfide  (EXP)
bisphenol A  (ISO)
cadmium atom  (EXP)
cadmium dichloride  (EXP)
chloroprene  (EXP)
cisplatin  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
entinostat  (ISO)
ethyl methanesulfonate  (ISO)
folic acid  (EXP)
gemcitabine  (ISO)
genistein  (EXP)
glycidol  (ISO)
hydroquinone  (ISO)
indometacin  (ISO)
lead diacetate  (EXP)
lipopolysaccharide  (EXP)
methamphetamine  (ISO)
methapyrilene  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
mitomycin C  (ISO)
paclitaxel  (ISO)
panobinostat  (ISO)
paracetamol  (ISO)
PD 0325901  (ISO)
phorbol 13-acetate 12-myristate  (EXP)
pirfenidone  (ISO)
resveratrol  (ISO)
S-adenosyl-L-methioninate  (EXP)
S-adenosyl-L-methionine  (EXP)
SB 431542  (ISO)
silicon dioxide  (ISO)
silver atom  (EXP)
silver(0)  (EXP)
sodium arsenite  (ISO)
succimer  (ISO)
sulforaphane  (ISO)
sunitinib  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP,ISO)
titanium dioxide  (ISO)
topotecan  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
valproic acid  (ISO)
valsartan  (ISO)
vincristine  (ISO)
vorinostat  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:10349636   PMID:10655483   PMID:11022042   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11390982   PMID:12202037   PMID:12242305   PMID:12466851   PMID:12477932   PMID:12590135  
PMID:12711221   PMID:15102471   PMID:15367668   PMID:15368895   PMID:15489334   PMID:15537544   PMID:15546868   PMID:15567413   PMID:15601857   PMID:15711539   PMID:15737621   PMID:16141072  
PMID:16141073   PMID:16260608   PMID:16280321   PMID:16602821   PMID:16611996   PMID:16873063   PMID:17101791   PMID:17786239   PMID:17922010   PMID:17988634   PMID:18480421   PMID:18824292  
PMID:18926829   PMID:19412888   PMID:19879272   PMID:19893013   PMID:20211142   PMID:20525066   PMID:20596014   PMID:20947501   PMID:21267068   PMID:21421818   PMID:21518438   PMID:21680747  
PMID:21708950   PMID:21731673   PMID:21746928   PMID:21873635   PMID:21953612   PMID:21985497   PMID:22226696   PMID:22442009   PMID:22715468   PMID:23288173   PMID:23297420   PMID:24101673  
PMID:24105743   PMID:25011550   PMID:25035344   PMID:25388417   PMID:25681462   PMID:25793404   PMID:25873389   PMID:26483211   PMID:27033599   PMID:27250566   PMID:27333946   PMID:27633396  
PMID:28028172   PMID:28855441   PMID:29520069   PMID:30031609   PMID:30186101   PMID:30372441   PMID:30679521   PMID:31202927   PMID:31320610   PMID:31659325   PMID:32546048   PMID:32554611  
PMID:32620134   PMID:32702412  


Genomics

Comparative Map Data
Hdac9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391234,097,579 - 34,967,094 (-)NCBIGRCm39mm39
GRCm39 Ensembl1234,097,579 - 34,967,094 (-)Ensembl
GRCm381234,047,580 - 34,917,095 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1234,047,580 - 34,917,095 (-)EnsemblGRCm38mm10GRCm38
MGSCv371235,056,362 - 35,213,754 (-)NCBIGRCm37mm9NCBIm37
MGSCv361234,956,744 - 35,114,121 (-)NCBImm8
Celera1235,799,634 - 35,959,002 (-)NCBICelera
Cytogenetic Map12A3NCBI
HDAC9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl718,086,949 - 19,002,416 (+)EnsemblGRCh38hg38GRCh38
GRCh38718,086,825 - 19,002,416 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37718,126,448 - 19,042,039 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36718,501,894 - 19,003,518 (+)NCBINCBI36hg18NCBI36
Build 34718,309,165 - 18,808,925NCBI
Celera718,515,050 - 19,016,663 (+)NCBI
Cytogenetic Map7p21.1NCBI
HuRef718,012,000 - 18,921,632 (+)NCBIHuRef
CHM1_1718,127,641 - 19,037,820 (+)NCBICHM1_1
CRA_TCAGchr7v2718,254,965 - 19,088,496 (+)NCBI
Hdac9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2650,762,074 - 51,624,311 (-)NCBI
Rnor_6.0 Ensembl653,488,883 - 54,059,119 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0653,487,367 - 54,358,694 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0663,109,688 - 63,978,416 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4653,066,308 - 53,114,402 (-)NCBIRGSC3.4rn4RGSC3.4
Celera649,930,173 - 50,491,018 (-)NCBICelera
Cytogenetic Map6q16NCBI
Hdac9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541021,245,562 - 21,932,023 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541021,046,312 - 21,932,029 (+)NCBIChiLan1.0ChiLan1.0
HDAC9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1718,138,665 - 18,975,832 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl718,138,761 - 18,970,717 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0718,740,580 - 19,653,615 (+)NCBIMhudiblu_PPA_v0panPan3
HDAC9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11432,469,349 - 33,310,439 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1432,588,414 - 33,304,387 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1431,927,168 - 32,838,858 (+)NCBI
ROS_Cfam_1.01432,319,281 - 33,231,263 (+)NCBI
UMICH_Zoey_3.11432,429,177 - 33,340,446 (+)NCBI
UNSW_CanFamBas_1.01432,129,507 - 33,041,580 (+)NCBI
UU_Cfam_GSD_1.01432,446,823 - 33,358,024 (+)NCBI
Hdac9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511876,722,917 - 77,572,050 (+)NCBI
SpeTri2.0NW_0049365464,398,003 - 5,247,649 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HDAC9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl987,449,359 - 88,186,965 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1987,164,400 - 88,192,803 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21278,058,419 - 278,182,393 (+)NCBISscrofa10.2Sscrofa10.2susScr3
HDAC9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12139,159,270 - 39,859,403 (-)NCBI
Vero_WHO_p1.0NW_02366604264,474,174 - 65,386,992 (+)NCBI
Hdac9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473911,431,463 - 12,162,073 (-)NCBI

Position Markers
C85918  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381234,415,198 - 34,415,328UniSTSGRCm38
MGSCv371235,100,063 - 35,100,193UniSTSGRCm37
Celera1235,843,336 - 35,843,466UniSTS
Cytogenetic Map12A3UniSTS
Whitehead/MRC_RH12320.61UniSTS
37.MMHAP88FLE4.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381234,050,541 - 34,050,733UniSTSGRCm38
MGSCv371234,735,406 - 34,735,598UniSTSGRCm37
Celera1235,483,191 - 35,483,383UniSTS
Cytogenetic Map12A3UniSTS
Whitehead_YAC12 UniSTS
RH118345  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381234,400,784 - 34,400,934UniSTSGRCm38
MGSCv371235,085,649 - 35,085,799UniSTSGRCm37
Celera1235,828,921 - 35,829,071UniSTS
Cytogenetic Map12A3UniSTS
Whitehead/MRC_RH12320.46UniSTS
AV022454  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381234,371,545 - 34,371,694UniSTSGRCm38
MGSCv371235,056,410 - 35,056,559UniSTSGRCm37
Celera1235,799,682 - 35,799,831UniSTS
Cytogenetic Map12A3UniSTS
Whitehead/MRC_RH12321.96UniSTS
Hdac9  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map12A3UniSTS
cM Map1214.85UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141660Nbwa1_mNZB and NZW autoimmunity 1 (mouse)Not determined1229013334290301Mouse
4142234Tmc1m3_mTmc1 modifier 3 (mouse)Not determined12536844076984429Mouse
1301163Eae16_msusceptibility to experimental allergic encephalomyelitis 16 (mouse)Not determined12767315941673302Mouse
13208568Bmiq11_mbody mass index QTL 11 (mouse)12800000040000000Mouse
1301037Cd4ts5_mCD4 T cell subset 5 (mouse)Not determined12830244542302582Mouse
1301723Fcsa7_mfemoral cross-sectional area 7 (mouse)Not determined12944100543441113Mouse
27226753Femd7_mfemur midshaft diameter 7, 10 week (mouse)12950000084100000Mouse
14746972Manh72_mmandible shape 72 (mouse)121056528244565282Mouse
10401249Bglu15_mblood glucose level 15 (mouse)Not determined121057064344570810Mouse
13207568Tcq14_mtotal cholesterol QTL 14 (mouse)121161000097210000Mouse
4141516slwr_mslowlearner (mouse)Not determined1234247646342615Mouse
10043977Obq34_mobesity QTL 34 (mouse)Not determined121509733249097332Mouse
1558978Cplaq10_mcircadian period of locomotor activity 10 (mouse)Not determined121529102578993590Mouse
26884413Bzwq9_mbi-zygomatic width QTL 9, 10 week (mouse)121610000047700000Mouse
1301574Lmblgq5_mlimb length QTL 5 (mouse)Not determined121754644680910109Mouse
15039339Nmrs29_mNAFLD-associated magnetic resonance shift 29 (mouse)121777585351775853Mouse
10043848Hdlq90_mHDL QTL 90 (mouse)Not determined121778994051790082Mouse
1300870Ath18_matherosclerosis 18 (mouse)Not determined121820996752210068Mouse
12904956Edlmmq10_mextensor digitorum longus muscle mass QTL 10 (mouse)121968983453689834Mouse
1302172Skts5_mskin tumor susceptibility 5 (mouse)Not determined122209886756099017Mouse
1300636Gct2_mgranulosa cell tumorigenesis 2 (mouse)Not determined122911390263114101Mouse
1301989Hdlq18_mHDL QTL 18 (mouse)Not determined122911390263114101Mouse
4141843Moen3_mmodifier of engrailed QTL 3 (mouse)Not determined122975480163754950Mouse
14747008Mancz10_mmandible centroid size 10 (mouse)122981673963816739Mouse
10402492Dipa8_mdrug induced psychomotor activation 8 (mouse)Not determined123488708968887236Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:987
Count of miRNA genes:506
Interacting mature miRNAs:617
Transcripts:ENSMUST00000110819
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001271386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_024124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006515261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006515262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006515264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006515266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006515271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006515273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006515275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006515276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011243911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011243912 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011243913 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011243916 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011243918 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011243921 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011243922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017315248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017315249 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017315250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017315251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017315252 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246990 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246991 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246992 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC113481 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC133459 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC137512 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC140184 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC154903 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC158514 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC163669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF235053 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF279371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF324492 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK083724 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK087563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK133334 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK144242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK173017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC067061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC098187 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR974575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF026095 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EL604734 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000110819   ⟹   ENSMUSP00000106443
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1234,371,497 - 34,528,874 (-)Ensembl
RefSeq Acc Id: ENSMUST00000209463   ⟹   ENSMUSP00000148007
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1234,433,145 - 34,618,493 (-)Ensembl
RefSeq Acc Id: ENSMUST00000209667   ⟹   ENSMUSP00000147755
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1234,373,827 - 34,528,304 (-)Ensembl
RefSeq Acc Id: ENSMUST00000209750   ⟹   ENSMUSP00000148029
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1234,052,301 - 34,528,304 (-)Ensembl
RefSeq Acc Id: ENSMUST00000209902   ⟹   ENSMUSP00000147519
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1234,047,580 - 34,528,328 (-)Ensembl
RefSeq Acc Id: ENSMUST00000209990   ⟹   ENSMUSP00000147395
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1234,052,301 - 34,528,304 (-)Ensembl
RefSeq Acc Id: ENSMUST00000210724   ⟹   ENSMUSP00000147903
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1234,095,881 - 34,528,304 (-)Ensembl
RefSeq Acc Id: ENSMUST00000211107   ⟹   ENSMUSP00000147869
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1234,373,827 - 34,437,307 (-)Ensembl
RefSeq Acc Id: ENSMUST00000211632
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1234,434,313 - 34,906,979 (-)Ensembl
RefSeq Acc Id: ENSMUST00000211752   ⟹   ENSMUSP00000148224
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1234,095,877 - 34,917,095 (-)Ensembl
RefSeq Acc Id: ENSMUST00000239321   ⟹   ENSMUSP00000159253
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1234,373,435 - 34,907,057 (-)Ensembl
RefSeq Acc Id: ENSMUST00000239340   ⟹   ENSMUSP00000159264
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1234,371,497 - 34,528,440 (-)Ensembl
RefSeq Acc Id: NM_001271386   ⟹   NP_001258315
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391234,097,581 - 34,967,094 (-)NCBI
GRCm381234,047,582 - 34,917,095 (-)NCBI
Celera1235,480,232 - 36,248,719 (-)NCBI
Sequence:
RefSeq Acc Id: NM_024124   ⟹   NP_077038
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391234,421,496 - 34,578,888 (-)NCBI
GRCm381234,371,497 - 34,528,889 (-)NCBI
MGSCv371235,056,362 - 35,213,754 (-)RGD
Celera1235,480,232 - 36,248,719 (-)NCBI
cM Map12 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006515261   ⟹   XP_006515324
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391234,097,579 - 34,732,153 (-)NCBI
GRCm381234,047,580 - 34,693,861 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006515262   ⟹   XP_006515325
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391234,097,579 - 34,693,866 (-)NCBI
GRCm381234,047,580 - 34,643,863 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006515264   ⟹   XP_006515327
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391234,097,579 - 34,957,002 (-)NCBI
GRCm381234,047,580 - 34,907,003 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006515266   ⟹   XP_006515329
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391234,097,579 - 34,956,996 (-)NCBI
GRCm381234,047,580 - 34,906,997 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006515271   ⟹   XP_006515334
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391234,097,579 - 34,668,738 (-)NCBI
GRCm381234,047,580 - 34,618,751 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006515273   ⟹   XP_006515336
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391234,421,496 - 34,771,836 (-)NCBI
GRCm381234,371,497 - 34,528,345 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006515275   ⟹   XP_006515338
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391234,421,496 - 34,956,912 (-)NCBI
GRCm381234,371,497 - 34,528,559 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006515276   ⟹   XP_006515339
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391234,421,496 - 34,578,344 (-)NCBI
GRCm381234,371,497 - 34,528,345 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011243911   ⟹   XP_011242213
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391234,097,579 - 34,695,006 (-)NCBI
GRCm381234,047,580 - 34,645,011 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011243912   ⟹   XP_011242214
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391234,097,579 - 34,693,866 (-)NCBI
GRCm381234,047,580 - 34,643,863 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011243913   ⟹   XP_011242215
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391234,097,579 - 34,693,866 (-)NCBI
GRCm381234,047,580 - 34,643,863 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011243916   ⟹   XP_011242218
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391234,097,579 - 34,693,866 (-)NCBI
GRCm381234,047,580 - 34,643,863 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011243918   ⟹   XP_011242220
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391234,097,579 - 34,579,201 (-)NCBI
GRCm381234,047,580 - 34,529,379 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011243921   ⟹   XP_011242223
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391234,097,579 - 34,668,401 (-)NCBI
GRCm381234,047,580 - 34,618,382 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011243922   ⟹   XP_011242224
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391234,097,579 - 34,693,121 (-)NCBI
GRCm381234,047,580 - 34,643,213 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017315248   ⟹   XP_017170737
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391234,097,579 - 34,693,866 (-)NCBI
GRCm381234,047,580 - 34,643,863 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017315249   ⟹   XP_017170738
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391234,097,579 - 34,887,249 (-)NCBI
GRCm381234,047,580 - 34,837,252 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017315250   ⟹   XP_017170739
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391234,097,579 - 34,771,889 (-)NCBI
GRCm381234,047,580 - 34,724,203 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017315251   ⟹   XP_017170740
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391234,421,496 - 34,957,002 (-)NCBI
GRCm381234,371,497 - 34,528,345 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017315252   ⟹   XP_017170741
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391234,097,579 - 34,579,157 (-)NCBI
GRCm381234,047,580 - 34,529,160 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030246984   ⟹   XP_030102844
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391234,097,579 - 34,957,002 (-)NCBI
GRCm381234,047,580 - 34,907,015 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030246985   ⟹   XP_030102845
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391234,097,579 - 34,774,172 (-)NCBI
GRCm381234,047,580 - 34,726,347 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030246986   ⟹   XP_030102846
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391234,097,579 - 34,668,733 (-)NCBI
GRCm381234,047,580 - 34,618,749 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030246987   ⟹   XP_030102847
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391234,097,579 - 34,579,158 (-)NCBI
GRCm381234,047,580 - 34,529,161 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030246988   ⟹   XP_030102848
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391234,097,579 - 34,579,158 (-)NCBI
GRCm381234,047,580 - 34,529,161 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030246990   ⟹   XP_030102850
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391234,097,579 - 34,579,160 (-)NCBI
GRCm381234,047,580 - 34,529,163 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030246991   ⟹   XP_030102851
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391234,097,579 - 34,579,160 (-)NCBI
GRCm381234,047,580 - 34,529,163 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030246992   ⟹   XP_030102852
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391234,097,579 - 34,579,160 (-)NCBI
GRCm381234,047,580 - 34,529,163 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036157669   ⟹   XP_036013562
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391234,097,579 - 34,693,866 (-)NCBI
RefSeq Acc Id: XM_036157670   ⟹   XP_036013563
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391234,097,579 - 34,956,936 (-)NCBI
RefSeq Acc Id: XM_036157671   ⟹   XP_036013564
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391234,097,579 - 34,956,992 (-)NCBI
RefSeq Acc Id: XM_036157672   ⟹   XP_036013565
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391234,097,579 - 34,956,973 (-)NCBI
RefSeq Acc Id: XM_036157673   ⟹   XP_036013566
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391234,097,579 - 34,579,157 (-)NCBI
RefSeq Acc Id: XM_036157674   ⟹   XP_036013567
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391234,097,579 - 34,579,157 (-)NCBI
RefSeq Acc Id: XM_036157675   ⟹   XP_036013568
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391234,097,579 - 34,579,157 (-)NCBI
RefSeq Acc Id: XM_036157676   ⟹   XP_036013569
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391234,097,579 - 34,579,158 (-)NCBI
RefSeq Acc Id: XM_036157677   ⟹   XP_036013570
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391234,097,579 - 34,579,158 (-)NCBI
RefSeq Acc Id: XM_036157678   ⟹   XP_036013571
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391234,097,579 - 34,579,160 (-)NCBI
RefSeq Acc Id: XM_036157679   ⟹   XP_036013572
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391234,423,250 - 34,956,992 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001258315 (Get FASTA)   NCBI Sequence Viewer  
  NP_077038 (Get FASTA)   NCBI Sequence Viewer  
  XP_006515324 (Get FASTA)   NCBI Sequence Viewer  
  XP_006515325 (Get FASTA)   NCBI Sequence Viewer  
  XP_006515327 (Get FASTA)   NCBI Sequence Viewer  
  XP_006515329 (Get FASTA)   NCBI Sequence Viewer  
  XP_006515334 (Get FASTA)   NCBI Sequence Viewer  
  XP_006515336 (Get FASTA)   NCBI Sequence Viewer  
  XP_006515338 (Get FASTA)   NCBI Sequence Viewer  
  XP_006515339 (Get FASTA)   NCBI Sequence Viewer  
  XP_011242213 (Get FASTA)   NCBI Sequence Viewer  
  XP_011242214 (Get FASTA)   NCBI Sequence Viewer  
  XP_011242215 (Get FASTA)   NCBI Sequence Viewer  
  XP_011242218 (Get FASTA)   NCBI Sequence Viewer  
  XP_011242220 (Get FASTA)   NCBI Sequence Viewer  
  XP_011242223 (Get FASTA)   NCBI Sequence Viewer  
  XP_011242224 (Get FASTA)   NCBI Sequence Viewer  
  XP_017170737 (Get FASTA)   NCBI Sequence Viewer  
  XP_017170738 (Get FASTA)   NCBI Sequence Viewer  
  XP_017170739 (Get FASTA)   NCBI Sequence Viewer  
  XP_017170740 (Get FASTA)   NCBI Sequence Viewer  
  XP_017170741 (Get FASTA)   NCBI Sequence Viewer  
  XP_030102844 (Get FASTA)   NCBI Sequence Viewer  
  XP_030102845 (Get FASTA)   NCBI Sequence Viewer  
  XP_030102846 (Get FASTA)   NCBI Sequence Viewer  
  XP_030102847 (Get FASTA)   NCBI Sequence Viewer  
  XP_030102848 (Get FASTA)   NCBI Sequence Viewer  
  XP_030102850 (Get FASTA)   NCBI Sequence Viewer  
  XP_030102851 (Get FASTA)   NCBI Sequence Viewer  
  XP_030102852 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013562 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013563 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013564 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013565 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013566 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013567 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013568 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013569 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013570 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013571 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013572 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAG48332 (Get FASTA)   NCBI Sequence Viewer  
  AAH98187 (Get FASTA)   NCBI Sequence Viewer  
  AAK15027 (Get FASTA)   NCBI Sequence Viewer  
  AAL86358 (Get FASTA)   NCBI Sequence Viewer  
  BAD32295 (Get FASTA)   NCBI Sequence Viewer  
  BAE25793 (Get FASTA)   NCBI Sequence Viewer  
  EDL36867 (Get FASTA)   NCBI Sequence Viewer  
  EDL36868 (Get FASTA)   NCBI Sequence Viewer  
  EDL36869 (Get FASTA)   NCBI Sequence Viewer  
  Q99N13 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_077038   ⟸   NM_024124
- Peptide Label: isoform 2
- UniProtKB: Q99N13 (UniProtKB/Swiss-Prot),   A0A0R4J1F3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001258315   ⟸   NM_001271386
- Peptide Label: isoform 1
- Sequence:
RefSeq Acc Id: XP_006515329   ⟸   XM_006515266
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_006515327   ⟸   XM_006515264
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_006515324   ⟸   XM_006515261
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_006515334   ⟸   XM_006515271
- Peptide Label: isoform X2
- UniProtKB: A0A1B0GRH0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006515325   ⟸   XM_006515262
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006515339   ⟸   XM_006515276
- Peptide Label: isoform X16
- Sequence:
RefSeq Acc Id: XP_006515336   ⟸   XM_006515273
- Peptide Label: isoform X18
- Sequence:
RefSeq Acc Id: XP_006515338   ⟸   XM_006515275
- Peptide Label: isoform X19
- Sequence:
RefSeq Acc Id: XP_011242214   ⟸   XM_011243912
- Peptide Label: isoform X2
- UniProtKB: A0A1B0GRH0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011242215   ⟸   XM_011243913
- Peptide Label: isoform X3
- UniProtKB: A0A1B0GR65 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011242218   ⟸   XM_011243916
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_011242213   ⟸   XM_011243911
- Peptide Label: isoform X11
- UniProtKB: A0A1B0GSQ5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011242224   ⟸   XM_011243922
- Peptide Label: isoform X14
- Sequence:
RefSeq Acc Id: XP_011242223   ⟸   XM_011243921
- Peptide Label: isoform X13
- Sequence:
RefSeq Acc Id: XP_011242220   ⟸   XM_011243918
- Peptide Label: isoform X11
- UniProtKB: A0A1B0GSQ5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017170738   ⟸   XM_017315249
- Peptide Label: isoform X11
- UniProtKB: A0A1B0GSQ5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017170739   ⟸   XM_017315250
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_017170737   ⟸   XM_017315248
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_017170741   ⟸   XM_017315252
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017170740   ⟸   XM_017315251
- Peptide Label: isoform X20
- Sequence:
RefSeq Acc Id: XP_030102844   ⟸   XM_030246984
- Peptide Label: isoform X7
RefSeq Acc Id: XP_030102845   ⟸   XM_030246985
- Peptide Label: isoform X9
RefSeq Acc Id: XP_030102846   ⟸   XM_030246986
- Peptide Label: isoform X11
RefSeq Acc Id: XP_030102852   ⟸   XM_030246992
- Peptide Label: isoform X15
RefSeq Acc Id: XP_030102851   ⟸   XM_030246991
- Peptide Label: isoform X15
RefSeq Acc Id: XP_030102850   ⟸   XM_030246990
- Peptide Label: isoform X15
RefSeq Acc Id: XP_030102847   ⟸   XM_030246987
- Peptide Label: isoform X2
RefSeq Acc Id: XP_030102848   ⟸   XM_030246988
- Peptide Label: isoform X3
RefSeq Acc Id: ENSMUSP00000106443   ⟸   ENSMUST00000110819
RefSeq Acc Id: ENSMUSP00000148224   ⟸   ENSMUST00000211752
RefSeq Acc Id: ENSMUSP00000159264   ⟸   ENSMUST00000239340
RefSeq Acc Id: ENSMUSP00000159253   ⟸   ENSMUST00000239321
RefSeq Acc Id: ENSMUSP00000147869   ⟸   ENSMUST00000211107
RefSeq Acc Id: ENSMUSP00000147903   ⟸   ENSMUST00000210724
RefSeq Acc Id: ENSMUSP00000148029   ⟸   ENSMUST00000209750
RefSeq Acc Id: ENSMUSP00000147519   ⟸   ENSMUST00000209902
RefSeq Acc Id: ENSMUSP00000147395   ⟸   ENSMUST00000209990
RefSeq Acc Id: ENSMUSP00000148007   ⟸   ENSMUST00000209463
RefSeq Acc Id: ENSMUSP00000147755   ⟸   ENSMUST00000209667
RefSeq Acc Id: XP_036013564   ⟸   XM_036157671
- Peptide Label: isoform X7
RefSeq Acc Id: XP_036013565   ⟸   XM_036157672
- Peptide Label: isoform X7
RefSeq Acc Id: XP_036013563   ⟸   XM_036157670
- Peptide Label: isoform X7
RefSeq Acc Id: XP_036013562   ⟸   XM_036157669
- Peptide Label: isoform X4
RefSeq Acc Id: XP_036013571   ⟸   XM_036157678
- Peptide Label: isoform X15
RefSeq Acc Id: XP_036013569   ⟸   XM_036157676
- Peptide Label: isoform X12
RefSeq Acc Id: XP_036013570   ⟸   XM_036157677
- Peptide Label: isoform X4
RefSeq Acc Id: XP_036013568   ⟸   XM_036157675
- Peptide Label: isoform X11
RefSeq Acc Id: XP_036013567   ⟸   XM_036157674
- Peptide Label: isoform X11
RefSeq Acc Id: XP_036013566   ⟸   XM_036157673
- Peptide Label: isoform X11
RefSeq Acc Id: XP_036013572   ⟸   XM_036157679
- Peptide Label: isoform X17
Protein Domains
HDAC4_Gln   Hist_deacetyl

Promoters
RGD ID:8678136
Promoter ID:EPDNEW_M17099
Type:single initiation site
Name:Hdac9_2
Description:Mus musculus histone deacetylase 9 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M17100  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381234,809,179 - 34,809,239EPDNEW
RGD ID:8678138
Promoter ID:EPDNEW_M17100
Type:initiation region
Name:Hdac9_1
Description:Mus musculus histone deacetylase 9 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M17099  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381234,906,980 - 34,907,040EPDNEW
RGD ID:6823052
Promoter ID:MM_KWN:11490
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:ENSMUST00000063046,   ENSMUST00000085463,   UC007NJA.1,   UC007NJB.1,   UC007NJC.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361235,213,666 - 35,214,166 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1931221 AgrOrtholog
Ensembl Genes ENSMUSG00000004698 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000106443 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000147395 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000147519 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000147755 UniProtKB/TrEMBL
  ENSMUSP00000147869 UniProtKB/TrEMBL
  ENSMUSP00000147903 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000148007 UniProtKB/TrEMBL
  ENSMUSP00000148029 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000148224 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000159253 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000159264 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000110819 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000209463 UniProtKB/TrEMBL
  ENSMUST00000209667 UniProtKB/TrEMBL
  ENSMUST00000209750 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000209902 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000209990 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000210724 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000211107 UniProtKB/TrEMBL
  ENSMUST00000211752 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000239321 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000239340 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 3.40.800.20 UniProtKB/TrEMBL
InterPro His_deacetylse UniProtKB/TrEMBL
  His_deacetylse_dom UniProtKB/TrEMBL
  His_deacetylse_dom_sf UniProtKB/TrEMBL
  Hist_deacetylase_Gln_rich_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Histone_deAcase_II_euk UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ureohydrolase_domain UniProtKB/TrEMBL
KEGG Report mmu:79221 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1931221 ENTREZGENE
NCBI Gene 79221 ENTREZGENE
PANTHER PTHR45364 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam HDAC4_Gln UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Hist_deacetyl UniProtKB/TrEMBL
PhenoGen Hdac9 PhenoGen
PIRSF HDAC_II_euk UniProtKB/TrEMBL
PRINTS HDASUPER UniProtKB/TrEMBL
Superfamily-SCOP SSF52768 UniProtKB/TrEMBL
UniProt A0A0R4J1F3 ENTREZGENE, UniProtKB/TrEMBL
  A0A1B0GR65 ENTREZGENE, UniProtKB/TrEMBL
  A0A1B0GRH0 ENTREZGENE, UniProtKB/TrEMBL
  A0A1B0GS15_MOUSE UniProtKB/TrEMBL
  A0A1B0GSB5_MOUSE UniProtKB/TrEMBL
  A0A1B0GSE4_MOUSE UniProtKB/TrEMBL
  A0A1B0GSN4_MOUSE UniProtKB/TrEMBL
  A0A1B0GSQ5 ENTREZGENE, UniProtKB/TrEMBL
  A0A1B0GT67_MOUSE UniProtKB/TrEMBL
  A0A668KL98_MOUSE UniProtKB/TrEMBL
  A0A668KM95_MOUSE UniProtKB/TrEMBL
  HDAC9_MOUSE UniProtKB/Swiss-Prot
  Q3UNF4_MOUSE UniProtKB/TrEMBL
  Q6A001_MOUSE UniProtKB/TrEMBL
  Q99N13 ENTREZGENE
UniProt Secondary Q4QQN7 UniProtKB/Swiss-Prot
  Q8R4Y6 UniProtKB/Swiss-Prot
  Q9EPT2 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-05 Hdac9  histone deacetylase 9  D030072B18Rik  RIKEN cDNA D030072B18 gene  Data Merged 737654 PROVISIONAL