Trim25 (tripartite motif-containing 25) - Rat Genome Database

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Gene: Trim25 (tripartite motif-containing 25) Mus musculus
Analyze
Symbol: Trim25
Name: tripartite motif-containing 25
RGD ID: 1614192
MGI Page MGI
Description: Predicted to enable RIG-I binding activity; transcription coactivator activity; and ubiquitin protein ligase activity. Involved in several processes, including innate immune response; negative regulation of viral entry into host cell; and negative regulation of viral release from host cell. Acts upstream of or within cellular response to leukemia inhibitory factor. Located in cytoplasm and nucleus. Is expressed in several structures, including alimentary system; central nervous system; genitourinary system; respiratory system; and sensory organ. Orthologous to human TRIM25 (tripartite motif containing 25); PARTICIPATES IN influenza A pathway; Retinoic acid-inducible gene (RIG) I-like receptor signaling pathway; INTERACTS WITH 1,2-dichloroethane; 1,2-dimethylhydrazine; 4-hydroxyphenyl retinamide.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: AA960166; AL022677; E3 ubiquitin/ISG15 ligase TRIM25; EFP; estrogen-responsive finger protein; RING-type E3 ubiquitin transferase; RING-type E3 ubiquitin transferase TRIM25; tripartite motif protein 25; tripartite motif-containing protein 25; ubiquitin/ISG15-conjugating enzyme TRIM25; Zfp14; Zfp147; zinc finger protein 147
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391188,890,194 - 88,911,119 (+)NCBIGRCm39mm39
GRCm39 Ensembl1188,890,202 - 88,911,119 (+)Ensembl
GRCm381188,999,403 - 89,020,294 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1188,999,376 - 89,020,293 (+)EnsemblGRCm38mm10GRCm38
MGSCv371188,860,717 - 88,881,607 (+)NCBIGRCm37mm9NCBIm37
MGSCv361188,815,570 - 88,836,383 (+)NCBImm8
Celera1198,615,674 - 98,636,481 (+)NCBICelera
Cytogenetic Map11CNCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (EXP)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4-dinitrotoluene  (ISO)
2-hydroxypropanoic acid  (ISO)
4-hydroxyphenyl retinamide  (EXP)
acetazolamide  (EXP)
aconitine  (ISO)
acrolein  (ISO)
acrylamide  (ISO)
afimoxifene  (ISO)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (EXP,ISO)
alpha-pinene  (ISO)
amphetamine  (ISO)
aristolochic acid  (ISO)
arsenous acid  (ISO)
avobenzone  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
cadmium dichloride  (ISO)
carbon nanotube  (EXP)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
cyclosporin A  (EXP,ISO)
dexamethasone  (EXP)
dextran sulfate  (EXP)
diarsenic trioxide  (ISO)
disodium selenite  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
entinostat  (ISO)
enzyme inhibitor  (ISO)
flutamide  (ISO)
folic acid  (EXP)
furan  (ISO)
genistein  (ISO)
gentamycin  (ISO)
hydrogen peroxide  (EXP)
leflunomide  (ISO)
lipopolysaccharide  (ISO)
methylphenidate  (EXP)
monosodium L-glutamate  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
pentachlorophenol  (EXP)
perfluorononanoic acid  (ISO)
phenobarbital  (ISO)
phenylephrine  (ISO)
propiconazole  (EXP)
rac-lactic acid  (ISO)
raloxifene  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
sodium fluoride  (EXP)
Soman  (ISO)
tamibarotene  (ISO)
temozolomide  (ISO)
tert-butyl hydroperoxide  (EXP)
titanium dioxide  (EXP)
trichostatin A  (ISO)
triptonide  (EXP)
valproic acid  (EXP,ISO)
vinclozolin  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:7592654   PMID:7671812   PMID:7789997   PMID:8248217   PMID:8530055   PMID:9094097   PMID:10349636   PMID:10426580   PMID:10518570   PMID:11042159   PMID:11076861   PMID:11217851  
PMID:11331580   PMID:12075357   PMID:12466851   PMID:12477932   PMID:12520002   PMID:14610273   PMID:14681479   PMID:15618518   PMID:16141072   PMID:16141073   PMID:18248090   PMID:18287559  
PMID:19915568   PMID:20439489   PMID:20818395   PMID:21267068   PMID:21292167   PMID:23209422   PMID:23912277   PMID:24015671   PMID:24457600   PMID:27528750   PMID:27721430   PMID:28594325  
PMID:28813674   PMID:29125140   PMID:30196744   PMID:30902577   PMID:31138677   PMID:31237466   PMID:31335993   PMID:32826889  


Genomics

Comparative Map Data
Trim25
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391188,890,194 - 88,911,119 (+)NCBIGRCm39mm39
GRCm39 Ensembl1188,890,202 - 88,911,119 (+)Ensembl
GRCm381188,999,403 - 89,020,294 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1188,999,376 - 89,020,293 (+)EnsemblGRCm38mm10GRCm38
MGSCv371188,860,717 - 88,881,607 (+)NCBIGRCm37mm9NCBIm37
MGSCv361188,815,570 - 88,836,383 (+)NCBImm8
Celera1198,615,674 - 98,636,481 (+)NCBICelera
Cytogenetic Map11CNCBI
TRIM25
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1756,836,387 - 56,914,080 (-)EnsemblGRCh38hg38GRCh38
GRCh381756,887,909 - 56,914,049 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371754,965,270 - 54,991,410 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361752,320,269 - 52,346,408 (-)NCBINCBI36hg18NCBI36
Build 341752,323,634 - 52,346,408NCBI
Celera1751,426,842 - 51,452,985 (-)NCBI
Cytogenetic Map17q22NCBI
HuRef1750,325,845 - 50,351,990 (-)NCBIHuRef
CHM1_11755,030,515 - 55,056,657 (-)NCBICHM1_1
Trim25
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21073,812,818 - 73,831,271 (+)NCBImRatBN7.2
Rnor_6.0 Ensembl1076,343,847 - 76,362,145 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01076,343,847 - 76,362,159 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01073,750,003 - 73,769,423 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41077,459,844 - 77,488,383 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1072,717,934 - 72,735,695 (+)NCBICelera
Cytogenetic Map10q26NCBI
Trim25
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554515,918,287 - 5,934,258 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554515,918,287 - 5,934,252 (+)NCBIChiLan1.0ChiLan1.0
TRIM25
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11755,826,458 - 55,852,422 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1755,826,458 - 55,852,422 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01750,965,592 - 50,991,630 (-)NCBIMhudiblu_PPA_v0panPan3
TRIM25
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1931,703,628 - 31,725,674 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl931,707,034 - 31,725,762 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha930,943,465 - 30,965,495 (-)NCBI
ROS_Cfam_1.0932,511,355 - 32,533,408 (-)NCBI
UMICH_Zoey_3.1931,296,490 - 31,318,526 (-)NCBI
UNSW_CanFamBas_1.0931,580,728 - 31,602,758 (-)NCBI
UU_Cfam_GSD_1.0931,664,093 - 31,686,131 (-)NCBI
Trim25
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560231,081,655 - 31,095,879 (-)NCBI
SpeTri2.0NW_0049364905,979,320 - 5,997,632 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRIM25
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1233,184,044 - 33,212,398 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11233,184,039 - 33,212,440 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21234,134,354 - 34,153,408 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TRIM25
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11636,496,829 - 36,522,427 (+)NCBI
ChlSab1.11636,496,829 - 36,522,427 (+)NCBI
ChlSab1.1 Ensembl1636,496,772 - 36,524,148 (+)Ensembl
Vero_WHO_p1.0NW_0236660777,316,204 - 7,343,303 (+)NCBI
Trim25
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462479511,967,908 - 11,986,707 (-)NCBI

Position Markers
AA960166  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv371188,881,366 - 88,881,545UniSTSGRCm37
MGSCv3713103,756,224 - 103,756,391UniSTSGRCm37
Celera13106,549,085 - 106,549,255UniSTS
Celera1198,636,240 - 98,636,419UniSTS
Celera1187,686,746 - 87,686,915UniSTS
Cytogenetic Map11CUniSTS
Whitehead/MRC_RH111162.53UniSTS
RH125330  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381189,019,626 - 89,019,753UniSTSGRCm38
MGSCv371188,880,940 - 88,881,067UniSTSGRCm37
Celera1198,635,812 - 98,635,939UniSTS
Cytogenetic Map11CUniSTS
Trim25  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381189,017,795 - 89,018,380UniSTSGRCm38
MGSCv371188,879,109 - 88,879,694UniSTSGRCm37
Celera1198,633,975 - 98,634,567UniSTS
Cytogenetic Map11CUniSTS
Trim25  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381189,017,792 - 89,018,383UniSTSGRCm38
MGSCv371188,879,106 - 88,879,697UniSTSGRCm37
Celera1198,633,972 - 98,634,570UniSTS
Cytogenetic Map11CUniSTS
Trim25  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11CUniSTS
cM Map11 UniSTS
Trim25  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11CUniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13208559Wght10_mweight 10 (mouse)11400000089000000Mouse
13208558Lgth12_mbody length 12 (mouse)11400000095000000Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11693027789128908Mouse
1357859Lvrq7_mliver weight QTL 7 (mouse)Not determined1112318637118131898Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112318637118131898Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1917420497007000Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112185736495990405Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44739211113167183Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114581775489927907Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156973201114267131Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115786383491863932Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116226517996265327Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162700000109500000Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116342858194173092Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116493951098939647Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116493951098939647Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116493951098939647Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166842594100842826Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166842594100842826Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66842594100842826Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166842594100842826Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166842594100842826Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166842594100842826Mouse
27226783Tibl5_mtibia length 5, 5 week (mouse)1168300000102000000Mouse
1300651Pcyts3_mplasmacytoma susceptibility 3 (mouse)Not determined1170800372104800540Mouse
1301681Sle13_msystematic lupus erythematosus susceptibility 13 (mouse)Not determined1170800372104800540Mouse
1558812Rafar_mretinoic acid induced forelimb autopod reduction (mouse)Not determined1170800372104800540Mouse
4141339Nilac2_mnicotine induced locomotor activity 2 (mouse)Not determined1170800372104800540Mouse
1301404Sbmd4_mspinal bone mineral density 4 (mouse)Not determined1172128823106128908Mouse
1301310Tmevd5_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 5 (mouse)Not determined1172835299106835463Mouse
4142348Pstc2_mperiosteal circumference 2 (mouse)Not determined1172927789106927907Mouse
10043866Adip19_madiposity 19 (mouse)Not determined1172927789106927907Mouse
11038695Par8_mpulmonary adenoma resistance 8 (mouse)1177172953111173092Mouse
1301414Heal10_mwound healing/regeneration 10 (mouse)Not determined1177546357111546496Mouse
10045616Heal25_mwound healing/regeneration 25 (mouse)Not determined1177546357111546496Mouse
1302124Eae7_msusceptibility to experimental allergic encephalomyelitis 7 (mouse)Not determined117768304799486994Mouse
10413882Moe1_mmodifier of epilepsy 1 (mouse)1177880152111880273Mouse
1301640Lore4_mloss of righting induced by ethanol 4 (mouse)Not determined1179265183107725646Mouse
14746970Manh71_mmandible shape 71 (mouse)1179525431113525431Mouse
10043865T2dm5sa_mtype 2 diabetes mellitus 5 in SMXA RI mice (mouse)Not determined1179922933104611872Mouse
27226758Femd3_mfemur midshaft diameter 3, 5 week (mouse)1181000000102000000Mouse
1300649Crhq1_mcompensatory renal hypertrophy QTL 1 (mouse)Not determined1181683655115683810Mouse
1300766Skull16_mskull morphology 16 (mouse)Not determined1181683655115683810Mouse
10412288Carg4_mCandida albicans resistance gene 4 (mouse)Not determined1181919441115919441Mouse
1301072Eae22_mexperimental allergic encephalomyelitis 22 (mouse)Not determined1182486872116486994Mouse
14747003Mancz9_mmandible centroid size 9 (mouse)1185954085119954085Mouse
15039374Adip29_madiposity 29 (mouse)1186717494120717494Mouse
15039376Bw42_mbody weight QTL 42 (mouse)1186717494120717494Mouse
15014785Mvlq1_mmacrovesicular liver lesion QTL 1 (mouse)1186717494120717494Mouse
27226789Feml16_mfemur length 16, 10 week (mouse)1187600000126900000Mouse
10044007Hbnr14_mHeligmosomoides bakeri nematode resistance 14 (mouse)Not determined1187611774121611872Mouse
1357631Motr1_mmodifier of tubby retinal degeneration 1 (mouse)Not determined1187800372103383289Mouse
1301491Abbp4_mA/J and C57BL/6 blood pressure 4 (mouse)Not determined118880876299190771Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2388
Count of miRNA genes:687
Interacting mature miRNAs:848
Transcripts:ENSMUST00000000284, ENSMUST00000100627, ENSMUST00000107896
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_009546 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017314476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB010029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK136434 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK154533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171744 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK172555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL646096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC006908 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC028430 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC034276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU407331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D63902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000000284   ⟹   ENSMUSP00000000284
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1188,999,376 - 89,020,293 (+)Ensembl
RefSeq Acc Id: ENSMUST00000100627   ⟹   ENSMUSP00000098192
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1188,999,376 - 89,013,702 (+)Ensembl
RefSeq Acc Id: ENSMUST00000107896   ⟹   ENSMUSP00000103528
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1188,999,376 - 89,020,293 (+)Ensembl
RefSeq Acc Id: NM_009546   ⟹   NP_033572
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391188,890,229 - 88,911,119 (+)NCBI
GRCm381188,999,403 - 89,020,293 (+)NCBI
MGSCv371188,860,717 - 88,881,607 (+)RGD
Celera1198,615,674 - 98,636,481 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_017314476   ⟹   XP_017169965
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391188,890,194 - 88,911,112 (+)NCBI
GRCm381188,999,403 - 89,020,294 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_033572   ⟸   NM_009546
- UniProtKB: Q61510 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017169965   ⟸   XM_017314476
- Peptide Label: isoform X1
- UniProtKB: Q3TU94 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000103528   ⟸   ENSMUST00000107896
RefSeq Acc Id: ENSMUSP00000000284   ⟸   ENSMUST00000000284
RefSeq Acc Id: ENSMUSP00000098192   ⟸   ENSMUST00000100627
Protein Domains
B30.2/SPRY   RING-type

Promoters
RGD ID:6822378
Promoter ID:MM_KWN:9158
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000000284,   ENSMUST00000100620,   ENSMUST00000100627,   ENSMUST00000107895,   OTTMUST00000002622
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361188,860,564 - 88,861,064 (+)MPROMDB
RGD ID:8676128
Promoter ID:EPDNEW_M16094
Type:initiation region
Name:Trim25_1
Description:Mus musculus tripartite motif-containing 25 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381188,999,452 - 88,999,512EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:102749 AgrOrtholog
Ensembl Genes ENSMUSG00000000275 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000000284 UniProtKB/TrEMBL
  ENSMUSP00000098192 UniProtKB/TrEMBL
  ENSMUSP00000103528 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000000284 UniProtKB/TrEMBL
  ENSMUST00000100627 UniProtKB/TrEMBL
  ENSMUST00000107896 ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH 2.60.120.920 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro B30.2/SPRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  B30.2/SPRY_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Butyrophylin_SPRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ConA-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SPRY_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRIM25_SPRY_PRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:217069 UniProtKB/Swiss-Prot
MGD MGI:102749 ENTREZGENE
NCBI Gene 217069 ENTREZGENE
Pfam PRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SPRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Trim25 PhenoGen
PRINTS BUTYPHLNCDUF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE B302_SPRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_RING_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART PRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SPRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF49899 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt Q3TAM2_MOUSE UniProtKB/TrEMBL
  Q3TU94 ENTREZGENE, UniProtKB/TrEMBL
  Q3U3X7_MOUSE UniProtKB/TrEMBL
  Q3UWD9_MOUSE UniProtKB/TrEMBL
  Q5SU71_MOUSE UniProtKB/TrEMBL
  Q5SU72_MOUSE UniProtKB/TrEMBL
  Q61510 ENTREZGENE
  Q6PIH1_MOUSE UniProtKB/TrEMBL
  Q922N9_MOUSE UniProtKB/TrEMBL
  TRI25_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q5SU70 UniProtKB/Swiss-Prot