Dnmt3bos (DNA methyltransferase 3B, opposite strand) - Rat Genome Database

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Gene: Dnmt3bos (DNA methyltransferase 3B, opposite strand) Mus musculus
Analyze
Symbol: Dnmt3bos
Name: DNA methyltransferase 3B, opposite strand
RGD ID: 1614169
MGI Page MGI
Description: INTERACTS WITH titanium dioxide
Type: protein-coding (Ensembl: lncRNA)
Previously known as: 7530422B04Rik; Gm563; RIKEN cDNA 7530422B04 gene
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
NCBI Annotation Information: Genome Annotation Status: not in current annotation release
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39 Ensembl2153,490,610 - 153,492,206 (-)EnsemblGRCm39 Ensembl
GRCm382153,648,690 - 153,650,635 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2153,648,690 - 153,650,286 (-)EnsemblGRCm38mm10GRCm38
MGSCv372153,474,426 - 153,476,371 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362153,474,426 - 153,476,371 (-)NCBIMGSCv36mm8
Celera2159,494,618 - 159,498,094 (-)NCBICelera
Cytogenetic Map2H1NCBI
cM Map275.79NCBI


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:122
Count of miRNA genes:118
Interacting mature miRNAs:122
Transcripts:ENSMUST00000124988
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000124988
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2153,490,610 - 153,492,206 (-)Ensembl
GRCm38.p6 Ensembl2153,648,690 - 153,650,286 (-)Ensembl
RefSeq Acc Id: XM_001473018   ⟹   XP_001473068
Type: CODING
Position: No map positions available.
RefSeq Acc Id: XM_001480604   ⟹   XP_001480654
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv372153,474,426 - 153,476,371 (-)RGD
RefSeq Acc Id: XM_003945357   ⟹   XP_003945406
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm382153,648,690 - 153,650,635 (-)NCBI
RefSeq Acc Id: XM_003946104   ⟹   XP_003946153
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
Celera2159,494,618 - 159,498,094 (-)NCBI
Promoters
RGD ID:15092441
Promoter ID:EPDNEWNC_M349
Type:single initiation site
Name:Dnmt3bos_1
Description:DNA methyltransferase 3B, opposite strand [Source:MGISymbol;Acc:MGI:2685409]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm382153,650,286 - 153,650,346EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000079000 Ensembl
MGD MGI:2685409 ENTREZGENE
NCBI Gene 228792 ENTREZGENE
PhenoGen Dnmt3bos PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-12-03 Dnmt3bos  DNA methyltransferase 3B, opposite strand  7530422B04Rik  RIKEN cDNA 7530422B04 gene  Symbol and/or name change 5135510 APPROVED