Gm1715 (predicted gene 1715) - Rat Genome Database

Name: Gm1715
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Gm1715 (predicted gene 1715) Mus musculus

Analyze

Symbol:

Gm1715

Name:

predicted gene 1715

RGD ID:

1614015

MGI Page

MGI

Description:

Type:

ncrna (Ensembl: lncRNA)

RefSeq Status:

VALIDATED

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	52,591,163 - 52,710,072 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	52,591,163 - 52,710,074 (+)	Ensembl		GRCm39 Ensembl
GRCm38	9	52,679,863 - 52,798,772 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	52,679,863 - 52,798,774 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	52,487,971 - 52,590,934 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	9	52,487,971 - 52,590,934 (+)	NCBI		MGSCv36	mm8
Celera	9	49,948,420 - 50,067,863 (+)	NCBI		Celera
Cytogenetic Map	9	A5.3	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

Cellular Component

cellular_component (ND)

Molecular Function

molecular_function (ND)

References

Additional References at PubMed

PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:16141072	PMID:16141073

Genomics

Variants

Variants in Gm1715
3338 total Variants

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1300643	Pvcan2_m	protection against vaginal candidiasis 2 (mouse)			Not determined		9	19943406	53943525	Mouse
1301439	Morph2_m	morphine antinociception 2 (mouse)			Not determined		9	20153362	54153492	Mouse
1301883	Skull12_m	skull morphology 12 (mouse)			Not determined		9	20306197	54306370	Mouse
1301045	Sluc10_m	susceptibility to lung cancer 10 (mouse)			Not determined		9	20306197	54306370	Mouse
10043950	Pbft5_m	percent body fat 5 (mouse)			Not determined		9	20306197	54306370	Mouse
4142352	Lmr17_m	leishmaniasis resistance 17 (mouse)			Not determined		9	20306197	54306370	Mouse
12904939	Edlmmq8_m	extensor digitorum longus muscle mass QTL 8 (mouse)					9	20852740	54852740	Mouse
13208563	Bmiq8_m	body mass index QTL 8 (mouse)					9	24911296	68907282	Mouse
11532712	Sluc39d_m	susceptibility to lung cancer 39d (mouse)					9	25587485	59587581	Mouse
11532696	Sluc39c_m	susceptibility to lung cancer 39c (mouse)					9	25587485	59587581	Mouse
11532694	Sluc39a_m	susceptibility to lung cancer 39a (mouse)					9	25587485	59587581	Mouse
11532695	Sluc39b_m	susceptibility to lung cancer 39b (mouse)					9	25587485	59587581	Mouse
10043987	Stheal13_m	soft tissue heal 13 (mouse)			Not determined		9	26796421	60796552	Mouse
1300932	Hdlq17_m	HDL QTL 17 (mouse)			Not determined		9	26796421	60796552	Mouse
10043867	Mtbcq9_m	multiple trait body composition QTL 9 (mouse)			Not determined		9	26796421	60796552	Mouse
10043878	Adip20_m	adiposity 20 (mouse)			Not determined		9	27251194	61251323	Mouse
10043847	Hdlq89_m	HDL QTL 89 (mouse)			Not determined		9	29292929	63293072	Mouse
1301782	Chol11_m	cholesterol 11 (mouse)			Not determined		9	29292929	63293072	Mouse
1301365	Ap5q_m	alcohol preference 5 QTL (mouse)			Not determined		9	30053164	64053277	Mouse
1357746	Vtbt7_m	vertebral trabecular bone trait 7 (mouse)			Not determined		9	30739915	64740021	Mouse
1302180	Actd4_m	activity-distance traveled 4 (mouse)			Not determined		9	32434563	66434857	Mouse
4141148	Cq5_m	cholesterol QTL 5 (mouse)			Not determined		9	32452421	66452546	Mouse
1301692	Hts_m	hypothermia sensitivity (mouse)			Not determined		9	32511172	66511421	Mouse
4141323	Ptnu3_m	proteinuria 3 (mouse)			Not determined		9	32889702	66889836	Mouse
1357709	Si5lq3_m	serum IGFBP-5 level QTL 3 (mouse)			Not determined		9	33111025	67111140	Mouse
1558872	Ibdq1_m	inflammatory bowel disease QTL 1 (mouse)			Not determined		9	33978840	73439255	Mouse
1301252	Etohc3_m	ethanol consumption 3 (mouse)			Not determined		9	35034478	69034599	Mouse
1301972	Cocrb8_m	cocaine related behavior 8 (mouse)			Not determined		9	35034478	69034599	Mouse
1558968	Tbdr1_m	body temperature response to dietary restriction, QTL 1 (mouse)			Not determined		9	35034478	69034599	Mouse
4142042	Alpq3_m	alcohol preference QTL 3 (mouse)			Not determined		9	37306197	98701707	Mouse
10043971	Obq32_m	obesity QTL 32 (mouse)			Not determined		9	37819528	71819528	Mouse
12790986	Pcho9_m	plasma cholesterol 9 (mouse)					9	38099575	72099575	Mouse
12790992	Arlsq1_m	aortic root lesion size QTL 1 (mouse)					9	38099575	72099575	Mouse
12791002	Arlsq2_m	aortic root lesion size QTL 2 (mouse)					9	38099575	72099575	Mouse
12738449	Spcq2_m	sperm count QTL 2 (mouse)					9	39399885	73399885	Mouse
4141071	Ath29_m	atherosclerosis 29 (mouse)			Not determined		9	40419594	74607925	Mouse
1301702	Brm1_m	brachyury modifier 1 (mouse)			Not determined		9	40805047	74805204	Mouse
1301558	Stheal8_m	soft tissue heal 8 (mouse)			Not determined		9	43480714	77480860	Mouse
10045639	Heal28_m	wound healing/regeneration 28 (mouse)			Not determined		9	43480714	77480860	Mouse
1301435	Trigq1_m	triglyceride QTL 1 (mouse)			Not determined		9	44428174	78428262	Mouse
4141572	Ntta3_m	neurotensin transcript abundance 3 (mouse)			Not determined			46597671	65831177	Mouse
4141754	Fecq4_m	fecundity QTL 4 (mouse)			Not determined		9	47543024	57805204	Mouse
13515057	Adip20b_m	adiposity 20b (mouse)					9	48700908	53791702	Mouse
1300563	Pgia5_m	proteoglycan induced arthritis 5 (mouse)			Not determined		9	48831056	82831177	Mouse
1300716	Cd4ts4_m	CD4 T cell subset 4 (mouse)			Not determined		9	48831056	82831177	Mouse
1301051	Eae9_m	susceptibility to experimental allergic encephalomyelitis 9 (mouse)			Not determined		9	49420298	63239852	Mouse
1301049	El4_m	epilepsy 4 (mouse)			Not determined		9	49420298	67151448	Mouse
4141224	Dxmod_m	doxorubicin nephropathy modifier (mouse)			Not determined			49452421	101406120	Mouse
14746993	Manh66_m	mandible shape 66 (mouse)					9	49814048	83814048	Mouse
1301184	Bdln4_m	body length 4 (mouse)			Not determined		9	50151320	84151448	Mouse
1301241	Renf1_m	renal failure 1 (mouse)			Not determined		9	52034478	99792481	Mouse
13525008	Hrtiq1_m	heart rate time index, QTL 1 (mouse)					9	52426098	68556008	Mouse

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NR_045333	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC091260	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK138605	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CT010440	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSMUST00000213681

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	9	52,591,163 - 52,710,074 (+)	Ensembl
GRCm38.p6 Ensembl	9	52,679,863 - 52,798,774 (+)	Ensembl

RefSeq Acc Id:

NR_045333

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	9	52,591,163 - 52,710,072 (+)	NCBI
GRCm38	9	52,679,863 - 52,798,772 (+)	ENTREZGENE
Celera	9	49,948,420 - 50,067,863 (+)	ENTREZGENE
cM Map	9		ENTREZGENE

Sequence:

show sequence

ACCTTGTCCTGGCATAACAGCCTCTCCAACACCATTCCCAGTTTCCTGCTGTTCCCCAGCTTTG
GGGCTGGGAGGAGCAAACCCACCCCCATCCCCACCTCCACCCTGCCAGCAACCCACCTTCATTC
AGCACAAGCACTCCTTTGCCTAGGAAGAAGCAGGCTTCAGTTCTTCCATTGCTCTATGCTTCAA
CCTCAACCGGTCTCCAGGTCTTCCAATGCCCAGGAGTTTGGAAATAGTCACTCACTGGCTGCCT
ACTGCAAGCTGGCAGGGCTCTTGAACCAGATCATCCAGATCATCCCAGAACCACTCTCCCAGCT
TCTACTCCTATTGCTGCACTGGCTGTGGGTGTGCAGTAAATGCGAAGAAATATGAGAAGGTGAC
TCTAAACCAGAAACAACAAATCTACACAAGTTCTAGGAAATCACTAACCTTCTATTCGTCATTA
ATTAAACCATCAATCAAAAGGATACACTTGCCAACCAGAAAGAACTCTTCAGATGGCCAACCAT
TTGTTACATCATAGCTTATGAAATAATCCATCTTTTTTTCATAAGCCAGCCTTCCTGCTCAGCG
GTACACTAGGAGATGAATCTTTCAGCTACTTCTGCTGGTGTCCTATGCCTGCAACCTGAAATTA
GGAAAAGCACACTGAAGTGTTGAGAAGCAGGAAGAAAATGACCTTGTAGGACAGAGCCCATCCT
TAGAAGAGGGAATTGATCCTTGAGGGCAGGGCAAGCTTCTTCTGAGAACCAGTTTCATCCCCTT
GAGCGCTGCCAGCTATGGGACTCCTTCAGCTCCTTTGCAGAAGCAGACTACGTGATCATCCAGA
CGAGACCCTGACAGTGACTGCATAACTGTGCACGCCCACTGCCCTCCTGCACCAACTCTTTCTC
TACGTACAAGTCTGAATCCATGTCAGTAACCAGGGGATGGGCCTGGGGTCAGCAAATACCTTTA
TTTCTTTCTCTTCCTAGTGTGGTCACATTAAATAAACCTCTTGCTGCTTTTCACTG

hide sequence

Promoters

RGD ID:

6844080

Promoter ID:

MM_KWN:57353

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

Brain

Transcripts:

AK138605_GM1715, NM_178906, UC009PLY.1

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	9	52,487,361 - 52,487,861 (-)	MPROMDB

RGD ID:

15093593

Promoter ID:

EPDNEWNC_M1504

Type:

single initiation site

Name:

Gm1715_1

Description:

predicted gene 1715 [Source:MGI Symbol;Acc:MGI:2686561]

SO ACC ID:

SO:0000170

Source:

EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	9	52,679,900 - 52,679,960	EPDNEWNC

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000111020	Ensembl, ENTREZGENE
Ensembl Transcript	ENSMUST00000213681	ENTREZGENE
MGD	MGI:2686561	ENTREZGENE
NCBI Gene	382139	ENTREZGENE
PhenoGen	Gm1715	PhenoGen
RNAcentral	URS000075AFE2	RNACentral

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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