B020004C17Rik (RIKEN cDNA B020004C17 gene) - Rat Genome Database

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Gene: B020004C17Rik (RIKEN cDNA B020004C17 gene) Mus musculus
Analyze
Symbol: B020004C17Rik
Name: RIKEN cDNA B020004C17 gene
RGD ID: 1613939
MGI Page MGI
Description:
Type: protein-coding (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: uncharacterized protein LOC432860
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391457,252,591 - 57,256,439 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1457,252,591 - 57,256,439 (+)EnsemblGRCm39 Ensembl
GRCm381457,015,134 - 57,018,982 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1457,015,134 - 57,018,982 (+)EnsemblGRCm38mm10GRCm38
MGSCv371457,633,977 - 57,637,819 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361448,135,684 - 48,139,526 (+)NCBIMGSCv36mm8
MGSCv361455,969,250 - 55,973,092 (+)NCBIMGSCv36mm8
Celera1454,805,727 - 54,809,526 (+)NCBICelera
Cytogenetic Map14C3NCBI
cM Map1429.7NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073  


Genomics

Variants

.
Variants in B020004C17Rik
138 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:363
Count of miRNA genes:289
Interacting mature miRNAs:314
Transcripts:ENSMUST00000178161
Prediction methods:Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
1357527Epfpq1_mepididymal fat percentage QTL 1 (mouse)Not determined142106245071885801Mouse
4142485Modor2_mmodifier of ocular retardation 2 (mouse)Not determined142492624858179769Mouse
13506929Recrq10_mrecombination rate in male meiosis QTL 10 (mouse)142792195761137449Mouse
10043886Cia49_mcollagen induced arthritis QTL 49 (mouse)Not determined142999699463997133Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
1300909Ath13_matherosclerosis 13 (mouse)Not determined143033525064335381Mouse
1300998Cia17_mcollagen induced arthritis 17 (mouse)Not determined143033525064335381Mouse
27226737Metcl12_mmetatarsal-calcaneal length 12, 10 week (mouse)143322195759437449Mouse
1300625Cosz2_mcocaine seizure 2 (mouse)Not determined143504579768785736Mouse
10043887Cia50_mcollagen induced arthritis QTL 50 (mouse)Not determined143743018571430320Mouse
4142419Tgq26_mtriglyceride QTL 26 (mouse)Not determined4033731974337319Mouse
1301777Bglq15_mbody growth late QTL 15 (mouse)Not determined144296241676962593Mouse
1301424Skull21_mskull morphology 21 (mouse)Not determined144296241676962593Mouse
1300805Mors3_mmodifier of obesity related sterility 3 (mouse)Not determined144303727077037418Mouse
1301091Bbaa21_mB.burgdorferi-associated arthritis 21 (mouse)Not determined144306584777066045Mouse
4141400Nilac8_mnicotine induced locomotor activity 8 (mouse)Not determined144306584777066045Mouse
4141484Hcbip1_mhexachlorobenzene induced porphyria 1 (mouse)Not determined4733525059962593Mouse
1300605El5_mepilepsy 5 (mouse)Not determined144945542583455556Mouse
4142364Pbwg18_mpostnatal body weight growth 18 (mouse)Not determined145228198486282125Mouse
1301489Lbm10_mlean body mass 10 (mouse)Not determined145376129687761529Mouse
12880432Fgf23lq3_mFGF23 serum level QTL 3 (mouse)145393744087937440Mouse
10043889Cia52_mcollagen induced arthritis QTL 52 (mouse)Not determined145608238190082509Mouse
1301562Hwq1_mheart weight quantitative locus 1 (mouse)Not determined145654674590546941Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000225045
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1457,252,591 - 57,256,439 (+)Ensembl
GRCm38.p6 Ensembl1457,015,134 - 57,018,982 (+)Ensembl
RefSeq Acc Id: NM_001256060   ⟹   NP_001242989
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391457,252,591 - 57,256,439 (+)NCBI
GRCm381457,015,134 - 57,018,982 (+)ENTREZGENE
Celera1454,805,721 - 54,809,526 (+)ENTREZGENE
cM Map14 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_001242989 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_001242989   ⟸   NM_001256060
- UniProtKB: J3QP07 (UniProtKB/TrEMBL)
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000096144 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000225045 ENTREZGENE
MGD MGI:3588236 ENTREZGENE
NCBI Gene 432860 ENTREZGENE
PhenoGen B020004C17Rik PhenoGen
UniProt J3QP07 ENTREZGENE