Vmn2r44 (vomeronasal 2, receptor 44) - Rat Genome Database

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Gene: Vmn2r44 (vomeronasal 2, receptor 44) Mus musculus
Analyze
No known orthologs.
Symbol: Vmn2r44
Name: vomeronasal 2, receptor 44
RGD ID: 1613931
MGI Page MGI
Description: Predicted to enable G protein-coupled receptor activity.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: EG434113; vomeronasal receptor Vmn2r44
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3978,370,459 - 8,386,237 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl78,369,163 - 8,386,332 (-)EnsemblGRCm39 Ensembl
GRCm3878,367,460 - 8,383,238 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl78,366,164 - 8,383,333 (-)EnsemblGRCm38mm10GRCm38
MGSCv3779,744,080 - 9,759,858 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3678,304,743 - 8,322,855 (-)NCBIMGSCv36mm8
Cytogenetic Map7A1NCBI
cM Map75.69NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:17382427   PMID:21873635  


Genomics

Variants

.
Variants in Vmn2r44
293 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:39
Count of miRNA genes:39
Interacting mature miRNAs:39
Transcripts:ENSMUST00000166499
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301177Vent3_mventricular size 3 (mouse)Not determined7120511925Mouse
10054067Sle20_msystematic lupus erythematosus susceptibility 20 (mouse)Not determined7120511925Mouse
1302188Lxw6_mlupus BXSB x NZW 6 (mouse)Not determined7121698146Mouse
12904941Edlmmq6_mextensor digitorum longus muscle mass QTL 6 (mouse)7121821047Mouse
12904948Tammq5_mtibialis anterior muscle mass QTL 5 (mouse)7121821047Mouse
12904953Gmmq5_mgastrocnemius muscle mass QTL 5 (mouse)7121821047Mouse
1301572Sluc30_msusceptibility to lung cancer 30 (mouse)Not determined7243169636431844Mouse
1302115Abhr3_mallergen-induced bronchial hyperresponsiveness 3 (mouse)Not determined7331599616637423Mouse
1301115Lrdm1_mlymphoproliferation (Fas) renal disease modifier 1 (mouse)Not determined7335204824879418Mouse
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7351172887142720Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360299972549748Mouse
25394569Skmw57_mskeletal muscle weight 57, gastroc (mouse)7458046916687861Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse


Expression


Sequence


RefSeq Acc Id: ENSMUST00000166499   ⟹   ENSMUSP00000132467
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl78,369,163 - 8,386,332 (-)Ensembl
GRCm38.p6 Ensembl78,366,164 - 8,383,333 (-)Ensembl
RefSeq Acc Id: ENSMUST00000232847
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl78,369,163 - 8,386,332 (-)Ensembl
GRCm38.p6 Ensembl78,366,164 - 8,383,333 (-)Ensembl
RefSeq Acc Id: NM_001105074   ⟹   NP_001098544
RefSeq Status: INFERRED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3978,370,459 - 8,386,237 (-)NCBI
GRCm3878,367,460 - 8,383,238 (-)ENTREZGENE
MGSCv3779,744,080 - 9,759,858 (+)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001385059   ⟹   NP_001371988
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3978,370,459 - 8,386,237 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036153214   ⟹   XP_036009107
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3978,371,840 - 8,386,237 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001098544 (Get FASTA)   NCBI Sequence Viewer  
  NP_001371988 (Get FASTA)   NCBI Sequence Viewer  
  XP_036009107 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000132467
  ENSMUSP00000132467.2
RefSeq Acc Id: NP_001098544   ⟸   NM_001105074
- Peptide Label: isoform 2 precursor
- UniProtKB: L7N2E1 (UniProtKB/TrEMBL),   K7N652 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000132467   ⟸   ENSMUST00000166499
RefSeq Acc Id: NP_001371988   ⟸   NM_001385059
- Peptide Label: isoform 1 precursor
- UniProtKB: K7N652 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036009107   ⟸   XM_036153214
- Peptide Label: isoform X1
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-L7N2E1-F1-model_v2 AlphaFold L7N2E1 1-861 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3643088 AgrOrtholog
Ensembl Genes ENSMUSG00000094098 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000166499 ENTREZGENE
  ENSMUST00000166499.4 UniProtKB/TrEMBL
Gene3D-CATH 2.10.50.30 UniProtKB/TrEMBL
  3.40.50.2300 UniProtKB/TrEMBL
InterPro ANF_lig-bd_rcpt UniProtKB/TrEMBL
  GPCR_3 UniProtKB/TrEMBL
  GPCR_3_9-Cys_dom UniProtKB/TrEMBL
  GPCR_3_9-Cys_sf UniProtKB/TrEMBL
  GPCR_3_C UniProtKB/TrEMBL
  GPCR_3_Ca_sens_rcpt-rel UniProtKB/TrEMBL
  GPCR_3_vmron_rcpt_2 UniProtKB/TrEMBL
  Peripla_BP_I UniProtKB/TrEMBL
MGD MGI:3643088 ENTREZGENE
NCBI Gene 434113 ENTREZGENE
PANTHER EC2-V2R PHEROMONE RECEPTOR PROTEIN-RELATED UniProtKB/TrEMBL
  PTHR24061 UniProtKB/TrEMBL
Pfam 7tm_3 UniProtKB/TrEMBL
  ANF_receptor UniProtKB/TrEMBL
  NCD3G UniProtKB/TrEMBL
PhenoGen Vmn2r44 PhenoGen
PRINTS GPCRMGR UniProtKB/TrEMBL
  VOMERONASL2R UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F3_4 UniProtKB/TrEMBL
Superfamily-SCOP SSF53822 UniProtKB/TrEMBL
UniProt K7N652 ENTREZGENE
  L7N2E1 ENTREZGENE, UniProtKB/TrEMBL