Vmn2r108 (vomeronasal 2, receptor 108) - Rat Genome Database

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Gene: Vmn2r108 (vomeronasal 2, receptor 108) Mus musculus
Analyze
No known orthologs.
Symbol: Vmn2r108
Name: vomeronasal 2, receptor 108
RGD ID: 1613837
MGI Page MGI
Description: Predicted to enable G protein-coupled receptor activity.
Type: protein-coding
RefSeq Status: INFERRED
Previously known as: EG627805; vomeronasal receptor Vmn2r108
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391720,682,635 - 20,701,498 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1720,676,589 - 20,701,593 (-)EnsemblGRCm39 Ensembl
GRCm381720,462,373 - 20,481,236 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1720,456,327 - 20,481,331 (-)EnsemblGRCm38mm10GRCm38
MGSCv371720,599,337 - 20,618,200 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361720,167,070 - 20,178,276 (-)NCBIMGSCv36mm8
MGSCv361719,521,535 - 19,532,741 (-)NCBIMGSCv36mm8
Celera1721,504,657 - 21,523,538 (-)NCBICelera
Cytogenetic Map17A3.2NCBI
cM Map1711.4NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:17382427   PMID:21873635  


Genomics

Variants

.
Variants in Vmn2r108
546 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:27
Count of miRNA genes:26
Interacting mature miRNAs:26
Transcripts:ENSMUST00000167314
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357902Obq19_mobesity QTL 19 (mouse)Not determined17125662076Mouse
12910527Nrq1a_mnoise-induced hearing loss resistant QTL 1a (mouse)17129198453Mouse
13452399Leusq6_mleucocytosis susceptibility QTL 6 (mouse)171746220851462345Mouse
12910528Nrq1_mnoise-induced hearing loss resistant QTL 1 (mouse)17129198453Mouse
1301327Lmr7_mleishmaniasis resistance 7 (mouse)Not determined17485475227715939Mouse
1300535Char3_mP. chabaudi malaria resistance QTL 3 (mouse)Not determined171746220851462345Mouse
1301331Lbw1_mlupus NZB x NZW 1 (mouse)Not determined171841835752420983Mouse
4141272Tfv1_mtotal food volume 1 (mouse)Not determined485475265637357Mouse
13452396Leusq3_mleucocytosis susceptibility QTL 3 (mouse)171746220851462345Mouse
10043949Pbft7_mpercent body fat 7 (mouse)Not determined17689393640893936Mouse
4141608Phl1_mprogressive hearing loss 1 (mouse)Not determined17787584329487423Mouse
4142150Stheal11_msoft tissue heal 11 (mouse)Not determined171228621183361768Mouse
11081168Tir7_mtrypanosome infection response 7 (mouse)171412337248123496Mouse
1302152Skull25_mskull morphology 25 (mouse)Not determined171681972150819843Mouse
1357452Vtbt18_mvertebral trabecular bone trait 18 (mouse)Not determined17120975022Mouse
12904946Tammq8_mtibialis anterior muscle mass QTL 8 (mouse)171245178746451787Mouse
1300995Fembrs4_mfemur breaking strength 4 (mouse)Not determined171506165249061760Mouse
1300914Pcir4_mperiosteal circumference 4 (mouse)Not determined171506165249061760Mouse
1302140Wta4_mweight adult 4 (mouse)Not determined171681972150819843Mouse
1301056Pas2_mpulmonary adenoma susceptibility 2 (mouse)Not determined171842214152424327Mouse
15039354Nmrs36_mNAFLD-associated magnetic resonance shift 36 (mouse)171914502553145025Mouse
1357680Idd23_minsulin dependent diabetes susceptibility 23 (mouse)Not determined17397489026401133Mouse
1302028Asbb3_mautoimmune susceptibility in C57BL/6J and BALB/c 3 (mouse)Not determined171087811944878219Mouse
1302070Tbbmd7_mtotal body bone mineral density 7 (mouse)Not determined171506165249061760Mouse
1300706Alan1_malloantigen response 1 (mouse)Not determined17485475246469702Mouse
1301840Ssial4_msusceptibility to sialadenitiss 4 (mouse)Not determined171817541252178214Mouse
1558886Lgth9_mbody length 9 (mouse)Not determined171506165249061760Mouse
1357743Lith3_mlithogenic gene 3 (mouse)Not determined17126194456Mouse
10412214Sxbq3_mSGC/Knj cross B6 QTL 3 (mouse)Not determined171746220851462345Mouse
4142342Lfnq4_mlung function QTL 4 (mouse)Not determined1120648439364059Mouse
1302038Radpf1_mradiation pulmonary fibrosis 1 (mouse)Not determined171683545533819843Mouse
13524851Asrq8_macoustic startle response 8 (mouse)17131030170Mouse
1301935Skull24_mskull morphology 24 (mouse)Not determined17858491442585149Mouse
1300890Bhr3_mbronchial hyperresponsiveness 3 (mouse)Not determined17397489048866091Mouse
1357789Kdnw3_mkidney weight 3 (mouse)Not determined17485475247885665Mouse
4141067Hbnr2_mHeligmosomoides bakeri nematode resistance 2 (mouse)Not determined1188597145886119Mouse
12910982Pifs2_mpeptide-induced fatal syndrome 2 (mouse)17126189355Mouse
1302100Circp2_mcircadian photosensitivity 2 (mouse)Not determined17129198453Mouse
1302196Myaa1_mmodifier of Yaa 1 (mouse)Not determined17120975022Mouse
1301615Cfld3_mcystic fibrosis lung disease 3 (mouse)Not determined17127081639Mouse
13524847Asrq8a_macoustic startle response 8a (mouse)171264696146646961Mouse
1301338Lmr1_mleishmaniasis resistance 1 (mouse)Not determined171008134086996400Mouse
4142507Obrq13_mobesity resistance QTL 13 (mouse)Not determined1219832925076769Mouse
1558807Ceat1_mchronic experimental autoimmune thyroiditis 1 (mouse)Not determined171263668226401133Mouse
1300613Pcyts4_mplasmacytoma susceptibility 4 (mouse)Not determined17127081639Mouse
10412276Leci2_mleukocyte endothelial cell interactions 2 (mouse)Not determined17334817537348299Mouse
4141215Mnic1_mmacronutrient intake, carbohydrate 1 (mouse)Not determined485475245670266Mouse
1300787Cd8mts5_mCD8 memory T cell subset 5 (mouse)Not determined17858491442585149Mouse
14747010Mancz14_mmandible centroid size 14 (mouse)171199818445998184Mouse
10412083Sm2_msusceptibility to Schistosoma mansoni infection 2 (mouse)Not determined171702994351030078Mouse

Markers in Region
D17Jcs125  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381720,476,721 - 20,476,925UniSTSGRCm38
MGSCv371720,613,685 - 20,613,889UniSTSGRCm37
Celera1721,519,017 - 21,519,227UniSTS
Cytogenetic Map17A3.2UniSTS
cM Map17 UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001104570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC154379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000167314   ⟹   ENSMUSP00000130373
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1720,676,589 - 20,701,593 (-)Ensembl
GRCm38.p6 Ensembl1720,456,327 - 20,481,331 (-)Ensembl
RefSeq Acc Id: ENSMUST00000232850   ⟹   ENSMUSP00000156389
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1720,676,589 - 20,701,593 (-)Ensembl
GRCm38.p6 Ensembl1720,456,327 - 20,481,331 (-)Ensembl
RefSeq Acc Id: ENSMUST00000232949   ⟹   ENSMUSP00000156816
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1720,676,589 - 20,701,593 (-)Ensembl
GRCm38.p6 Ensembl1720,456,327 - 20,481,331 (-)Ensembl
RefSeq Acc Id: ENSMUST00000233143   ⟹   ENSMUSP00000156637
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1720,676,589 - 20,701,593 (-)Ensembl
GRCm38.p6 Ensembl1720,456,327 - 20,481,331 (-)Ensembl
RefSeq Acc Id: ENSMUST00000233382   ⟹   ENSMUSP00000156802
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1720,676,589 - 20,701,593 (-)Ensembl
GRCm38.p6 Ensembl1720,456,327 - 20,481,331 (-)Ensembl
RefSeq Acc Id: ENSMUST00000233388   ⟹   ENSMUSP00000156935
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1720,676,589 - 20,701,593 (-)Ensembl
GRCm38.p6 Ensembl1720,456,327 - 20,481,331 (-)Ensembl
RefSeq Acc Id: ENSMUST00000233572   ⟹   ENSMUSP00000156635
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1720,676,589 - 20,701,593 (-)Ensembl
GRCm38.p6 Ensembl1720,456,327 - 20,481,331 (-)Ensembl
RefSeq Acc Id: ENSMUST00000233830   ⟹   ENSMUSP00000156499
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1720,676,589 - 20,701,593 (-)Ensembl
GRCm38.p6 Ensembl1720,456,327 - 20,481,331 (-)Ensembl
RefSeq Acc Id: NM_001104570   ⟹   NP_001098040
RefSeq Status: INFERRED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391720,682,635 - 20,701,498 (-)NCBI
GRCm381720,462,373 - 20,481,236 (-)ENTREZGENE
MGSCv371720,599,337 - 20,618,200 (-)RGD
Celera1721,504,657 - 21,523,538 (-)RGD
cM Map17 ENTREZGENE
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_001098040   ⟸   NM_001104570
- Peptide Label: precursor
- UniProtKB: E9PYS0 (UniProtKB/TrEMBL),   E9Q6V2 (UniProtKB/TrEMBL),   A0A3B2WAK9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000156635   ⟸   ENSMUST00000233572
RefSeq Acc Id: ENSMUSP00000156637   ⟸   ENSMUST00000233143
RefSeq Acc Id: ENSMUSP00000156935   ⟸   ENSMUST00000233388
RefSeq Acc Id: ENSMUSP00000156802   ⟸   ENSMUST00000233382
RefSeq Acc Id: ENSMUSP00000156499   ⟸   ENSMUST00000233830
RefSeq Acc Id: ENSMUSP00000156816   ⟸   ENSMUST00000232949
RefSeq Acc Id: ENSMUSP00000156389   ⟸   ENSMUST00000232850
RefSeq Acc Id: ENSMUSP00000130373   ⟸   ENSMUST00000167314
Protein Domains
G-protein coupled receptors family 3 profile   Receptor ligand binding region

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-E9PYS0-F1-model_v2 AlphaFold E9PYS0 1-855 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3643822 AgrOrtholog
Ensembl Genes ENSMUSG00000091805 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000167314 ENTREZGENE
  ENSMUST00000167314.3 UniProtKB/TrEMBL
  ENSMUST00000232850.2 UniProtKB/TrEMBL
  ENSMUST00000232949.2 UniProtKB/TrEMBL
  ENSMUST00000233143.2 UniProtKB/TrEMBL
  ENSMUST00000233382.2 UniProtKB/TrEMBL
  ENSMUST00000233388.2 UniProtKB/TrEMBL
  ENSMUST00000233572.2 UniProtKB/TrEMBL
  ENSMUST00000233830.2 UniProtKB/TrEMBL
Gene3D-CATH 2.10.50.30 UniProtKB/TrEMBL
  3.40.50.2300 UniProtKB/TrEMBL
InterPro ANF_lig-bd_rcpt UniProtKB/TrEMBL
  GPCR_3 UniProtKB/TrEMBL
  GPCR_3_9-Cys_dom UniProtKB/TrEMBL
  GPCR_3_9-Cys_sf UniProtKB/TrEMBL
  GPCR_3_C UniProtKB/TrEMBL
  GPCR_3_Ca_sens_rcpt-rel UniProtKB/TrEMBL
  GPCR_3_vmron_rcpt_2 UniProtKB/TrEMBL
  Peripla_BP_I UniProtKB/TrEMBL
KEGG Report mmu:627805 UniProtKB/TrEMBL
MGD MGI:3643822 ENTREZGENE
NCBI Gene 627805 ENTREZGENE
PANTHER PTHR24061 UniProtKB/TrEMBL
  VOMERONASAL 2, RECEPTOR 105-RELATED UniProtKB/TrEMBL
Pfam 7tm_3 UniProtKB/TrEMBL
  ANF_receptor UniProtKB/TrEMBL
  NCD3G UniProtKB/TrEMBL
PhenoGen Vmn2r108 PhenoGen
PRINTS GPCRMGR UniProtKB/TrEMBL
  VOMERONASL2R UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F3_4 UniProtKB/TrEMBL
Superfamily-SCOP SSF53822 UniProtKB/TrEMBL
UniProt A0A3B2WAK9 ENTREZGENE, UniProtKB/TrEMBL
  A0A3B2WAT0_MOUSE UniProtKB/TrEMBL
  A0A3B2WB20_MOUSE UniProtKB/TrEMBL
  A0A3B2WCR1_MOUSE UniProtKB/TrEMBL
  A0A3B2WD17_MOUSE UniProtKB/TrEMBL
  E9PYS0 ENTREZGENE, UniProtKB/TrEMBL
  E9Q6V2 ENTREZGENE
UniProt Secondary E9Q6V2 UniProtKB/TrEMBL