Gm7666 (predicted pseudogene 7666) - Rat Genome Database

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Gene: Gm7666 (predicted pseudogene 7666) Mus musculus
Analyze
Symbol: Gm7666
Name: predicted pseudogene 7666
RGD ID: 1613779
MGI Page MGI
Description:
Type: pseudo (Ensembl: transcribed_processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: EG665511
Related Functional Gene: Phb1  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39156,683,338 - 6,684,346 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl156,683,404 - 6,684,222 (+)EnsemblGRCm39 Ensembl
GRCm38156,653,857 - 6,654,865 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl156,653,923 - 6,654,741 (+)EnsemblGRCm38mm10GRCm38
MGSCv37156,603,857 - 6,604,865 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36156,601,065 - 6,602,103 (+)NCBIMGSCv36mm8
Celera156,502,430 - 6,503,438 (+)NCBICelera
Cytogenetic Map15A1NCBI
cM Map153.22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Gm7666
18 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:173
Count of miRNA genes:160
Interacting mature miRNAs:168
Transcripts:ENSMUST00000146631
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357459Nhdlq7_mnon-HDL QTL 7 (mouse)Not determined15120489829Mouse
1302121Cliff_mcliff drop aversion (mouse)Not determined15120489829Mouse
1300953Bdt5_mbone density traits 5 (mouse)Not determined15120489829Mouse
5491193Mobq4_mmultigenic obesity QTL 4 (mouse)Not determined15120489829Mouse
1301662Faq8_mfluctuating asymmetry QTL 8 (mouse)Not determined15120489829Mouse
1301023Sluc24_msusceptibility to lung cancer 24 (mouse)Not determined15120489829Mouse
4141541Tglq3_mtriglyceride QTL 3 (mouse)Not determined15120489829Mouse
11062069Bpq31_mblood pressure QTL 31 (mouse)15126273195Mouse
4141446Ffaq4_mfree fatty acid QTL 4 (mouse)Not determined127101390Mouse
1300594Eae2_msusceptibility to experimental allergic encephalomyelitis 2 (mouse)Not determined15131218736Mouse
1301136Pgia8_mproteoglycan induced arthritis 8 (mouse)Not determined15324016724388176Mouse
4141358Ath22_matherosclerosis 22 (mouse)Not determined346465237464652Mouse
10401902Sicd2_mseizure-induced cell death 2 (mouse)Not determined15347438971197538Mouse
4141952W3q7_mweight 3 weeks QTL 7 (mouse)Not determined348969478601286Mouse
4142252Tailaq4_mtail length adjusted QTL 4 (mouse)Not determined348969478601286Mouse
4142448Tailq6_mtail length QTL 6 (mouse)Not determined348969478601286Mouse
1357559Scfq2_msubcutaneous fat pad weight QTL 2 (mouse)Not determined15348969478601286Mouse
1357659Epfpq4_mepididymal fat percentage QTL 4 (mouse)Not determined15348969478601286Mouse
11252136Modvl4_mmodifier of vacuolated lens (mouse)15562049439620614Mouse
26884409Bzwq16_mbi-zygomatic width QTL 16, 16 week (mouse)15612948138000244Mouse
26884384Skwq12_mskull length QTL 12, 16 week (mouse)15612948150763396Mouse
26884387Skwq8_mskull length QTL 8, 10 week (mouse)15612948168271849Mouse
26884412Bzwq10_mbi-zygomatic width QTL 10, 10 week (mouse)15612948171471849Mouse
26884417Bzwq4_mbi-zygomatic width QTL 4, 5 week (mouse)15612948172471849Mouse
27226786Feml11_mfemur length 11, 5 week (mouse)15612948175871849Mouse
27095932Ulnl11_mulna length 11, 16 week (mouse)15612948176384200Mouse
27226717Tibw4_mtibia width 4, proximal, 10 week (mouse)15612948178684200Mouse
27226734Tibmd5_mtibia midshaft diameter 5, 10 week (mouse)15612948186684201Mouse
26884442Sklq6_mskull length QTL 6, 5 week (mouse)156129481100797881Mouse

Markers in Region
PMC152247P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv37X130,588,154 - 130,588,954UniSTSGRCm37
MGSCv37156,603,923 - 6,604,741UniSTSGRCm37
Celera156,502,496 - 6,503,314UniSTS
CeleraX116,929,996 - 116,930,796UniSTS
Cytogenetic Map15A1UniSTS
Cytogenetic MapXE3UniSTS
Cytogenetic Map11DUniSTS
cM Map1155.6UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NG_005753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC158901 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000146631
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl156,683,404 - 6,684,222 (+)Ensembl
GRCm38.p6 Ensembl156,653,923 - 6,654,741 (+)Ensembl

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000067547 Ensembl, ENTREZGENE
MGD MGI:3648907 ENTREZGENE
NCBI Gene 665511 ENTREZGENE
PhenoGen Gm7666 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 Gm7666  predicted pseudogene 7666  Gm7666  predicted gene 7666  Symbol and/or name change 5135510 APPROVED