Foxl2os (forkhead box L2, opposite strand) - Rat Genome Database
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Gene: Foxl2os (forkhead box L2, opposite strand) Mus musculus
Analyze
Symbol: Foxl2os
Name: forkhead box L2, opposite strand
RGD ID: 1613665
MGI Page MGI
Description: Is expressed in follicle cell of primordial follicle and ovary.
Type: ncrna
RefSeq Status: VALIDATED
Also known as: ENSMUSG00000074122
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39998,831,208 - 98,837,363 (-)NCBIGRCm39mm39
GRCm38998,949,155 - 98,955,310 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl998,949,781 - 98,955,299 (-)EnsemblGRCm38mm10GRCm38
MGSCv37998,849,574 - 98,855,729 (-)NCBIGRCm37mm9NCBIm37
MGSCv36998,850,200 - 98,855,718 (-)NCBImm8
Celera998,486,878 - 98,493,035 (-)NCBICelera
Cytogenetic Map9E3.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:15820304   PMID:16141072   PMID:16141073   PMID:18287559   PMID:18697905  


Genomics

Position Markers
UniSTS:491376  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38998,955,607 - 98,956,847UniSTSGRCm38
MGSCv37998,856,026 - 98,857,266UniSTSGRCm37
Celera998,493,332 - 98,494,811UniSTS
Cytogenetic Map9E4UniSTS
Cytogenetic Map9E3.3UniSTS
Foxl2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38998,955,661 - 98,956,030UniSTSGRCm38
MGSCv37998,856,080 - 98,856,449UniSTSGRCm37
Celera998,493,386 - 98,493,755UniSTS
Cytogenetic Map9E3.3UniSTS
Cytogenetic Map9E4UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141224Dxmod_mdoxorubicin nephropathy modifier (mouse)Not determined49541121101528921Mouse
1301241Renf1_mrenal failure 1 (mouse)Not determined95212317899910428Mouse
13207569Tcq13_mtotal cholesterol QTL 13 (mouse)959990000109260000Mouse
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63332429120362868Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63332429120362868Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963332429120362868Mouse
1301636Lith5_mlithogenic gene 5 (mouse)Not determined966207024100207122Mouse
10045638Heal29_mwound healing/regeneration 29 (mouse)Not determined967124167101124167Mouse
1357610Vtbt8_mvertebral trabecular bone trait 8 (mouse)Not determined968897510102897652Mouse
1301924Bmd10_mbone mineral density 10 (mouse)Not determined968897510102897652Mouse
1301302Pas4_mpulmonary adenoma susceptibility 4 (mouse)Not determined969239845103239920Mouse
1301621Hpic1_mhaloperidol-induced catalepsy 1 (mouse)Not determined969546513103546645Mouse
1301573Etohcta8_methanol conditioned taste aversion 8 (mouse)Not determined972977005106977152Mouse
10054068El8_mepilepsy 8 (mouse)Not determined972977005106977152Mouse
1301725Lifespan1_mlife span 1 (mouse)Not determined974368177108368325Mouse
1302065El1_mepilepsy 1 (mouse)Not determined975775364114474379Mouse
10054492El7_mepilepsy 7 (mouse)Not determined975775364114474379Mouse
1301869Tbbmd4_mtotal body bone mineral density 4 (mouse)Not determined976117105101528921Mouse
1301407Rapop2_mradiation-induced apoptosis 2 (mouse)Not determined976535936110536130Mouse
1301192Skts6_mskin tumor susceptibility 6 (mouse)Not determined978640645112640755Mouse
10401247Bglu14_mblood glucose level 14 (mouse)Not determined979397810113397888Mouse
1301732Char1_mP. chabaudi malaria resistance QTL 1 (mouse)Not determined981798268115798392Mouse
1300884Sluc11_msusceptibility to lung cancer 11 (mouse)Not determined982910333116910428Mouse
1357461Idd2_minsulin dependent diabetes susceptibility 2 (mouse)Not determined982910333116910428Mouse
10766454Char10_mP. chabaudi malaria resistance QTL 10 (mouse)982910333116910428Mouse
1301487Nociq1_mnociceptive sensitivity inflammatory QTL 1 (mouse)Not determined984528818118528921Mouse
10412180Msam3_mmuscle, skeletal, activity measure 3 (mouse)Not determined985897510108641186Mouse
1300549Bbaa17_mB. burgdorferi-associated arthritis 17 (mouse)Not determined986230401120230530Mouse
1302103Dob2_mdietary obesity 2 (mouse)Not determined986239845120289624Mouse
11251716Siim2_mstress induced immobility 2 (mouse)986748483120748483Mouse
12880422V25Dq6_mvitamin D inactive form serum level QTL 6 (mouse)987800000121800000Mouse
10412242Alpq8_malcohol preference QTL 8 (mouse)Not determined989284925123284925Mouse
1301649Psl1_mpromotion susceptibility QTL 1 (mouse)Not determined989412277123412396Mouse
18182932Metl3_mmetabolite locus 3, N-acetylglutamate (mouse)989563342123563342Mouse
1357657Pymr_mPlasmodium yoelli malaria resistance (mouse)Not determined989977005118938021Mouse
12910770Splic1_mspleen iron content 1 (mouse)991413879124595110Mouse
12910772Lvic6_mliver iron content 6 (mouse)991413879124595110Mouse
12910773Splic3_mspleen iron content 3 (mouse)991413879124595110Mouse
1558767Skmw11_mskeletal muscle weight 11 (mouse)Not determined991641084124595110Mouse
13463474Hbbcq5_mhemoglobin concentration QTL 5 (mouse)991641084124595110Mouse
13463475Hctq7_mhematocrit QTL 7 (mouse)991641084124595110Mouse
13463477Rbc9_mred blood cell count 9 (mouse)991641084124595110Mouse
13463478Mchq18_mmean corpuscular hemoglobin QTL 18 (mouse)991641084124595110Mouse
13463480Mchcq2_mmean corpuscular hemoglobin concentration QTL 2 (mouse)991641084124595110Mouse
12904937Edlmmq9_mextensor digitorum longus muscle mass QTL 9 (mouse)991683173124595110Mouse
12904947Tammq7_mtibialis anterior muscle mass QTL 7 (mouse)991683173124595110Mouse
12904961Gmmq7_mgastrocnemius muscle mass QTL 7 (mouse)991683173124595110Mouse
1302001Bdln5_mbody length 5 (mouse)Not determined993762590124595110Mouse
1301484Bwq6_mbody weight (mouse)Not determined993762590124595110Mouse
14746992Manh67_mmandible shape 67 (mouse)994036768124595110Mouse
11081166Psl5_mpromotion susceptibility QTL 5 (mouse)994981301112872929Mouse
11537364Cnes5_mC. neoformans susceptibility locus 5 (mouse)996917590124595110Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:91
Count of miRNA genes:89
Interacting mature miRNAs:91
Transcripts:ENSMUST00000181706
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000181706
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl998,949,781 - 98,955,299 (-)Ensembl
RefSeq Acc Id: ENSMUST00000188093
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl998,953,790 - 98,954,284 (-)Ensembl
RefSeq Acc Id: ENSMUST00000189148
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl998,953,872 - 98,954,798 (-)Ensembl
RefSeq Acc Id: NR_003248
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39998,831,208 - 98,837,363 (-)NCBI
GRCm38998,949,155 - 98,955,310 (-)ENTREZGENE
MGSCv37998,849,574 - 98,855,729 (-)RGD
Celera998,486,878 - 98,493,035 (-)RGD
cM Map9 ENTREZGENE
Sequence:
Promoters
RGD ID:6844536
Promoter ID:MM_KWN:58477
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney
Transcripts:NM_012020,   NR_003248
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36998,856,236 - 98,857,387 (-)MPROMDB
RGD ID:8670542
Promoter ID:EPDNEW_M13302
Type:initiation region
Name:Foxl2os_1
Description:Mus musculus forkhead box L2, opposite strand , long non-codingRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38998,955,346 - 98,955,406EPDNEW
RGD ID:15093670
Promoter ID:EPDNEWNC_M1566
Type:initiation region
Name:Foxl2os_1
Description:forkhead box L2, opposite strand [Source:MGISymbol;Acc:MGI:3614944]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38998,955,346 - 98,955,406EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000097072 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000181706 ENTREZGENE
MGD MGI:3614944 ENTREZGENE
NCBI Gene 768252 ENTREZGENE
PhenoGen Foxl2os PhenoGen
RNAcentral URS000075EF3D RNACentral
UniGene Mm.129645 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-11-26 Foxl2os  forkhead box L2, opposite strand    forkhead box L2 opposite strand transcript  Symbol and/or name change 5135510 APPROVED