Pigbos1 (Pigb opposite strand 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Pigbos1 (Pigb opposite strand 1) Mus musculus
Analyze
Symbol: Pigbos1
Name: Pigb opposite strand 1
RGD ID: 1613632
MGI Page MGI
Description: INVOLVED IN regulation of endoplasmic reticulum unfolded protein response (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy 80 (ortholog); FOUND IN integral component of mitochondrial outer membrane (ortholog); INTERACTS WITH crocidolite asbestos; tetrachloromethane; 2-hydroxypropanoic acid (ortholog)
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 2310009A05Rik; 5031420N21Rik; hypothetical protein LOC66364; hypothetical protein LOC78815; RIKEN cDNA 2310009A05 gene; RIKEN cDNA 5031420N21 gene; uncharacterized protein LOC66364; uncharacterized protein LOC78815
RGD Orthologs
Human
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39972,947,000 - 72,950,064 (+)NCBIGRCm39mm39
GRCm39 Ensembl972,947,000 - 72,950,061 (+)Ensembl
GRCm38973,039,718 - 73,042,782 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl973,039,718 - 73,042,779 (+)EnsemblGRCm38mm10GRCm38
MGSCv37972,887,522 - 72,890,582 (+)NCBIGRCm37mm9NCBIm37
Celera970,225,950 - 70,229,009 (+)NCBICelera
Cytogenetic Map9DNCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:16141072   PMID:16141073   PMID:17967808   PMID:18799693   PMID:27899360  


Genomics

Comparative Map Data
Pigbos1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39972,947,000 - 72,950,064 (+)NCBIGRCm39mm39
GRCm39 Ensembl972,947,000 - 72,950,061 (+)Ensembl
GRCm38973,039,718 - 73,042,782 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl973,039,718 - 73,042,779 (+)EnsemblGRCm38mm10GRCm38
MGSCv37972,887,522 - 72,890,582 (+)NCBIGRCm37mm9NCBIm37
Celera970,225,950 - 70,229,009 (+)NCBICelera
Cytogenetic Map9DNCBI
PIGBOS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1555,317,184 - 55,319,161 (-)EnsemblGRCh38hg38GRCh38
GRCh381555,317,184 - 55,348,725 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371555,609,382 - 55,611,321 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map15q21.3NCBI
HuRef1532,435,319 - 32,437,272 (-)NCBIHuRef
CHM1_11555,727,850 - 55,729,854 (-)NCBICHM1_1
Pigbos1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2873,775,732 - 73,780,102 (+)NCBI
Rnor_6.0879,715,337 - 79,719,706 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0873,370,273 - 73,373,883 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera867,975,369 - 67,979,746 (-)NCBICelera
Cytogenetic Map8q24NCBI
PIGBOS1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11552,609,721 - 52,611,705 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1552,610,151 - 52,610,315 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01534,286,568 - 34,325,835 (-)NCBIMhudiblu_PPA_v0panPan3
PIGBOS1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13020,716,509 - 20,718,608 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3020,680,878 - 20,683,534 (-)NCBI
ROS_Cfam_1.03020,865,474 - 20,868,145 (-)NCBI
UMICH_Zoey_3.13020,809,331 - 20,811,991 (-)NCBI
UNSW_CanFamBas_1.03020,893,388 - 20,896,057 (-)NCBI
UU_Cfam_GSD_1.03021,025,157 - 21,027,833 (-)NCBI
Pigbos1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864098,978,831 - 98,980,853 (-)NCBI
SpeTri2.0NW_00493647116,827,097 - 16,829,005 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PIGBOS1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11116,519,834 - 116,522,515 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21129,056,601 - 129,060,650 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PIGBOS1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12628,115,884 - 28,120,997 (+)NCBI
Vero_WHO_p1.0NW_023666048113,147,162 - 113,155,289 (-)NCBI
Pigbos1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247316,304,962 - 6,307,303 (+)NCBI

Position Markers
BB253410  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38973,042,205 - 73,042,322UniSTSGRCm38
MGSCv37972,890,012 - 72,890,129UniSTSGRCm37
Celera970,228,440 - 70,228,557UniSTS
Whitehead/MRC_RH9701.68UniSTS
UniSTS:236196  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38973,042,510 - 73,042,718UniSTSGRCm38
MGSCv37972,890,317 - 72,890,525UniSTSGRCm37
Celera970,228,744 - 70,228,952UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558872Ibdq1_minflammatory bowel disease QTL 1 (mouse)Not determined93406754473531973Mouse
4142042Alpq3_malcohol preference QTL 3 (mouse)Not determined93739490198819654Mouse
12738449Spcq2_msperm count QTL 2 (mouse)93949260173492601Mouse
4141071Ath29_matherosclerosis 29 (mouse)Not determined94050829874700643Mouse
1301702Brm1_mbrachyury modifier 1 (mouse)Not determined94089776474897921Mouse
1301558Stheal8_msoft tissue heal 8 (mouse)Not determined94357343177573577Mouse
10045639Heal28_mwound healing/regeneration 28 (mouse)Not determined94357343177573577Mouse
1301435Trigq1_mtriglyceride QTL 1 (mouse)Not determined94452089278520980Mouse
1300716Cd4ts4_mCD4 T cell subset 4 (mouse)Not determined94892377482923895Mouse
1300563Pgia5_mproteoglycan induced arthritis 5 (mouse)Not determined94892377482923895Mouse
4141224Dxmod_mdoxorubicin nephropathy modifier (mouse)Not determined49541121101528921Mouse
14746993Manh66_mmandible shape 66 (mouse)94990676683906766Mouse
1301184Bdln4_mbody length 4 (mouse)Not determined95024403884244166Mouse
1301241Renf1_mrenal failure 1 (mouse)Not determined95212317899910428Mouse
12790990Tgl7_mtriglyceride 7 (mouse)95465267888652678Mouse
10043877Adip21_madiposity 21 (mouse)Not determined95653182690531973Mouse
4141676Neogq1_mneonatal growth QTL 1 (mouse)Not determined95789776486239920Mouse
1301172Fembrs6_mfemur breaking strength 6 (mouse)Not determined95911710593117252Mouse
1301803Stheal9_msoft tissue heal 9 (mouse)Not determined95911710593117252Mouse
5491195Mobq8_mmultigenic obesity QTL 8 (mouse)Not determined95946266493462846Mouse
1300848Skull13_mskull morphology 13 (mouse)Not determined95946266493462846Mouse
1301456Adip5_madiposity 5 (mouse)Not determined95946266493462846Mouse
13207569Tcq13_mtotal cholesterol QTL 13 (mouse)959990000109260000Mouse
1301611Lrnx3_mlearning contextual 3 (mouse)Not determined96224248596242599Mouse
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63332429120362868Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63332429120362868Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963332429120362868Mouse
11081165Psl6_mpromotion susceptibility QTL 6 (mouse)96513390995640755Mouse
1301290Smgd1_msubmucosal gland distribution 1 (mouse)Not determined96592377486695914Mouse
1301636Lith5_mlithogenic gene 5 (mouse)Not determined966207024100207122Mouse
10045638Heal29_mwound healing/regeneration 29 (mouse)Not determined967124167101124167Mouse
1357610Vtbt8_mvertebral trabecular bone trait 8 (mouse)Not determined968897510102897652Mouse
1301924Bmd10_mbone mineral density 10 (mouse)Not determined968897510102897652Mouse
1301302Pas4_mpulmonary adenoma susceptibility 4 (mouse)Not determined969239845103239920Mouse
10412174Habiir4_mhyperoxic acute lung injury imprinted region 4 (mouse)Not determined96936046598819654Mouse
1301621Hpic1_mhaloperidol-induced catalepsy 1 (mouse)Not determined969546513103546645Mouse
1301573Etohcta8_methanol conditioned taste aversion 8 (mouse)Not determined972977005106977152Mouse
10054068El8_mepilepsy 8 (mouse)Not determined972977005106977152Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:122
Count of miRNA genes:118
Interacting mature miRNAs:120
Transcripts:ENSMUST00000184319
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000184126   ⟹   ENSMUSP00000159173
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl973,039,718 - 73,042,779 (+)Ensembl
RefSeq Acc Id: ENSMUST00000184319
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl973,039,730 - 73,042,368 (+)Ensembl
RefSeq Acc Id: NM_001308425   ⟹   NP_001295354
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39972,947,000 - 72,950,064 (+)NCBI
GRCm38973,039,718 - 73,042,782 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001295354 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL26284 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001295354   ⟸   NM_001308425
- Sequence:
RefSeq Acc Id: ENSMUSP00000159173   ⟸   ENSMUST00000184126

Promoters
RGD ID:8670162
Promoter ID:EPDNEW_M13111
Type:multiple initiation site
Name:2310009A05Rik_1
Description:Mus musculus RIKEN cDNA 2310009A05 gene , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38973,039,730 - 73,039,790EPDNEW
RGD ID:15093620
Promoter ID:EPDNEWNC_M1530
Type:single initiation site
Name:2310009A05Rik_1
Description:RIKEN cDNA 2310009A05 gene [Source:MGISymbol;Acc:MGI:1913614]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38973,039,730 - 73,039,790EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000098332 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000159173 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000184126 ENTREZGENE, UniProtKB/TrEMBL
KEGG Report mmu:66364 UniProtKB/TrEMBL
MGD MGI:1913614 ENTREZGENE
NCBI Gene 66364 ENTREZGENE
PhenoGen Pigbos1 PhenoGen
UniProt A0A5F8MPY0_MOUSE UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-10-08 Pigbos1  Pigb opposite strand 1  2310009A05Rik  RIKEN cDNA 2310009A05 gene  Symbol and/or name change 5135510 APPROVED
2016-04-05 2310009A05Rik  RIKEN cDNA 2310009A05 gene  5031420N21Rik  RIKEN cDNA 5031420N21 gene  Data Merged 737654 PROVISIONAL