4930517G24Rik (RIKEN cDNA 4930517G24 gene)

Gene: 4930517G24Rik (RIKEN cDNA 4930517G24 gene) Mus musculus

Analyze

Symbol:

4930517G24Rik

Name:

RIKEN cDNA 4930517G24 gene

RGD ID:

1613628

MGI Page

MGI

Description:

Type:

ncrna (Ensembl: lncRNA)

RefSeq Status:

VALIDATED

Previously known as:

hypothetical protein LOC67644; uncharacterized protein LOC67644

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	107,931,962 - 107,944,341 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	107,931,976 - 107,944,344 (+)	Ensembl		GRCm39 Ensembl
GRCm38	8	107,205,330 - 107,217,709 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
Celera	8	111,431,880 - 111,444,520 (+)	NCBI		Celera
Cytogenetic Map	8	D3	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

Cellular Component

cellular_component (ND)

Molecular Function

molecular_function (ND)

References

Additional References at PubMed

PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:16141072	PMID:16141073

Genomics

Variants

Variants in 4930517G24Rik
325 total Variants

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4140967	Bmd39_m	bone mineral density 39 (mouse)			Not determined		8	32506572	117965439	Mouse
1558875	Eae31_m	experimental allergic encephalomyelitis susceptibility 31 (mouse)			Not determined		8	35109930	115563747	Mouse
27226754	Femd6_m	femur midshaft diameter 6, 10 week (mouse)					8	37867154	110326632	Mouse
1357708	Orq1_m	ovulation rate QTL 1 (mouse)			Not determined		8	71740461	124622354	Mouse
4142023	W3q5_m	weight 3 weeks QTL 5 (mouse)			Not determined			71740461	124622354	Mouse
27095912	Pglq14_m	pelvic girdle length QTL 14, 16 week (mouse)					8	74126628	126826739	Mouse
1558890	Lith18_m	lithogenic gene 18 (mouse)			Not determined		8	76402145	110402251	Mouse
1357470	Obq16_m	obesity QTL 16 (mouse)			Not determined		8	76411976	110412125	Mouse
10412234	Nhdlq14_m	non-HDL QTL 14 (mouse)			Not determined		8	76411976	110412125	Mouse
1301874	Hdlq16_m	HDL QTL 16 (mouse)			Not determined		8	76411976	110412125	Mouse
1301099	Cbm2_m	cerebellum weight 2 (mouse)			Not determined		8	79245241	113245331	Mouse
1301581	Char2_m	P. chabaudi malaria resistance QTL 2 (mouse)			Not determined		8	79808806	113809031	Mouse
10755530	Wbc2_m	white blood cell count 2 (mouse)					8	81819296	115819296	Mouse
10755519	Wbc1_m	white blood cell count 1 (mouse)					8	82345783	116345783	Mouse
1301766	Desp1_m	despair 1 (mouse)			Not determined		8	85486208	119486373	Mouse
1302049	Heal1_m	wound healing/regeneration 1 (mouse)			Not determined		8	86443553	120443701	Mouse
1301253	Skmw2_m	skeletal muscle weight 2 (mouse)			Not determined		8	86443553	120443701	Mouse
10045619	Heal14_m	wound healing/regeneration 14 (mouse)			Not determined		8	86443553	120443701	Mouse
27226796	Scvln16_m	sacral vertebrae length 2, 16 week (mouse)					8	89726628	130027694	Mouse
1357494	Obsty2_m	obesity 2 (mouse)			Not determined		8	96245241	129745061	Mouse
12880431	Fgf23lq2_m	FGF23 serum level QTL 2 (mouse)					8	97626632	130127694	Mouse
11252141	Fdr2_m	fat response to dietary restriction 2 (mouse)					8	98390634	130127694	Mouse
1301481	Lith11_m	lithogenic gene 11 (mouse)			Not determined		8	98563635	130127694	Mouse
1302105	Im1_m	Immunoregulatory 1 (mouse)			Not determined		8	99828531	130127694	Mouse
1301080	Sluc9_m	susceptibility to lung cancer 9 (mouse)			Not determined		8	99828531	130127694	Mouse
4141435	Fbtq3_m	femoral bone trait QTL 3 (mouse)			Not determined		8	100965309	130127694	Mouse
1300560	Tgl1_m	triglyceride level 1 (mouse)			Not determined		8	102486208	111650036	Mouse
1300681	Pgia22_m	proteoglycan induced arthritis 22 (mouse)			Not determined		8	102486208	116025457	Mouse
1301316	Dntcs1_m	dental caries susceptibility 1 (mouse)			Not determined		8	103443553	127781786	Mouse
11532691	Sluc38_m	susceptibility to lung cancer 38 (mouse)					8	105033977	130127694	Mouse
11532692	Sluc38a_m	susceptibility to lung cancer 38a (mouse)					8	105033977	130127694	Mouse
14746994	Manh65_m	mandible shape 65 (mouse)					8	106489629	130127694	Mouse

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NR_166498	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_166499	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC125207	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK015813	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK019773	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSMUST00000241277

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	107,931,998 - 107,944,344 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000246433

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	107,931,976 - 107,944,344 (+)	Ensembl

RefSeq Acc Id:

NR_166498

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	107,931,962 - 107,944,341 (+)	NCBI
GRCm38	8	107,205,330 - 107,217,709 (+)	NCBI

Sequence:

show sequence

AGTCTGACATCTACAGAGGCAGTTGGCATTGGCCCCATTCAAGCACTCCCCGAGGTCTACAGTG
GAGAAGAGAAGGCTGCCAAGCCCCTGTGAAGAAGAAAGAGACTGTGTATCGTCCCAGCCCCTCG
TGACTTCACACTGGGTGTGAAGACAGAATAGGATCCTGAAAGAGGCCGACTTTAACGAAAGGAA
TGAGTGTGTGCACTTTTGGACATGGCGTCTAGATGTCCTTCCAATTAAGCGGTGCACAGTAAGT
TGGGGAAACCGGATTCAGATGCAAGGTTCGCAGCAAAGGCGCTAAAGAATCGCACAGTCAACCT
CGTCTACAGATGGCTGGAGGCATGAGACACAAGCTTTCAAAGCAGTTTTTAAGCCACCAACCAT
AAAGGCTCAGGAAAGAATCCAGAAACTACCCCAAAATTTCCCATGATGATTGACATCAAGAGAA
CACCATTCTGGACCAGTTTCTGAGGTCGAGACTATGGAGATTGCCATTATTGAATGTAGTCTCC
CCTCCCCCAGCCTGAAACCAGCTTGCTCAGGGGTGGAGCTTCCTGCTCATTCGTTCTGCCACGC
CCACTGCTGGAACCTGCGGAGCCATACACGTGCACCTTTCTACTGGACCAGAGATTATTCGGCG
GGAATCGGGTCCCCTCCCCCTTCCTTCATAACTGAGTGTCGCAACAGTAAAATTTGAGCTTTGA
TCA

hide sequence

RefSeq Acc Id:

NR_166499

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	107,931,962 - 107,944,341 (+)	NCBI
GRCm38	8	107,205,330 - 107,217,709 (+)	NCBI

Sequence:

show sequence

AGTCTGACATCTACAGAGGCAGTTGGCATTGGCCCCATTCAAGCACTCCCCGAGGTCTACAGTG
GAGAAGAGAAGGCTGCCAAGCCCCTGTGAAGAAGAAAGAGACTGTGTATCGTCCCAGCCCCTCG
TGACTTCACACTGGGTGTGAAGACAGAATAGGATCCTGAAAGAGGCCGACTTTAACGAAAGGAA
TGAGTGTGTGCACTTTTGGACATGGCGTCTAGATGTCCTTCCAATTAAGCGGTGCACAGTAAGT
TGGGGAAACCGGATTCAGATGCAAGGTTCGCAGCAAAGGCGCTAAAGAATCGCACAGTCAACCT
CGTCTACAGATGGCTGGAGGCATGAGACACAAGCTTTCAAAGCAGTTTTTAAGCCACCAACCAT
AAAGGCTCAGGAAAGAATCCAGAAACTACCCCAAAATTTCCCATGATGATTGACATCAAGAGAA
CACCATTCTGGACCAGTTTCTGAGCCTGAAACCAGCTTGCTCAGGGGTGGAGCTTCCTGCTCAT
TCGTTCTGCCACGCCCACTGCTGGAACCTGCGGAGCCATACACGTGCACCTTTCTACTGGACCA
GAGATTATTCGGCGGGAATCGGGTCCCCTCCCCCTTCCTTCATAACTGAGTGTCGCAACAGTAA
AATTTGAGCTTTGATCA

hide sequence

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000120083	Ensembl, ENTREZGENE
Ensembl Transcript	ENSMUST00000241277	ENTREZGENE
	ENSMUST00000246433	ENTREZGENE
MGD	MGI:1914894	ENTREZGENE
NCBI Gene	67644	ENTREZGENE
PhenoGen	4930517G24Rik	PhenoGen
RNAcentral	URS0001980F57	RNACentral
	URS0001981027	RNACentral

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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