Jpx (Jpx transcript, Xist activator (non-protein coding))

Gene: Jpx (Jpx transcript, Xist activator (non-protein coding)) Mus musculus

Analyze

Symbol:

Jpx

Name:

Jpx transcript, Xist activator (non-protein coding)

RGD ID:

1613602

MGI Page

MGI

Description:

Acts upstream of or within positive regulation of transcription by RNA polymerase II. Orthologous to human JPX (JPX transcript, XIST activator).

Type:

ncrna (Ensembl: lncRNA)

RefSeq Status:

VALIDATED

Previously known as:

2010000I03Rik; 2510040I06Rik; En; Enox

RGD Orthologs

Human

Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	102,537,164 - 102,550,031 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	102,537,158 - 102,609,302 (+)	Ensembl		GRCm39 Ensembl
GRCm38	X	103,493,558 - 103,506,425 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	103,493,556 - 103,565,696 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	X	100,688,915 - 100,701,764 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
Celera	X	90,395,068 - 90,407,923 (+)	NCBI		Celera
Cytogenetic Map	X	D	NCBI
cM Map	X	46.17	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

syndromic X-linked intellectual disability Lubs type (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (EXP)

aflatoxin B1 (ISO)

arsenite(3-) (ISO)

avobenzone (ISO)

Benoxacor (EXP)

bisphenol A (EXP)

buta-1,3-diene (EXP)

butanal (ISO)

chlordecone (EXP)

pentanal (ISO)

perfluorononanoic acid (ISO)

potassium chromate (ISO)

sodium arsenite (ISO)

sodium dodecyl sulfate (ISO)

tris(2-butoxyethyl) phosphate (ISO)

trovafloxacin (EXP)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

positive regulation of transcription by RNA polymerase II (IGI)

random inactivation of X chromosome (IGI,IMP)

Cellular Component

cellular_component (ND)

Molecular Function

molecular_function (ND)

References

References - curated

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12045143	PMID:12160738	PMID:12466851	PMID:12952890	PMID:16141072	PMID:16141073	PMID:16648467	PMID:21029862
PMID:23791181	PMID:23940725	PMID:24316575	PMID:24613346	PMID:29734339	PMID:32238933	PMID:35451177	PMID:36990422	PMID:37942612

Genomics

Comparative Map Data

Jpx
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	102,537,164 - 102,550,031 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	102,537,158 - 102,609,302 (+)	Ensembl		GRCm39 Ensembl
GRCm38	X	103,493,558 - 103,506,425 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	103,493,556 - 103,565,696 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	X	100,688,915 - 100,701,764 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
Celera	X	90,395,068 - 90,407,923 (+)	NCBI		Celera
Cytogenetic Map	X	D	NCBI
cM Map	X	46.17	NCBI

JPX
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	73,944,324 - 74,070,384 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	73,944,182 - 74,070,408 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	X	73,164,159 - 73,290,219 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	73,205,592 - 73,207,391 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	X	73,447,638 - 73,573,698 (+)	NCBI		Celera
Cytogenetic Map	X	q13.2	NCBI
HuRef	X	66,797,561 - 66,926,565 (+)	NCBI		HuRef
CHM1_1	X	73,057,162 - 73,183,190 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	X	72,377,875 - 72,503,933 (+)	NCBI		T2T-CHM13v2.0

Jpx
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	72,577,163 - 72,730,887 (+)	NCBI		GRCr8
mRatBN7.2	X	68,511,491 - 68,665,132 (+)	NCBI	mRatBN7.2	mRatBN7.2
Rnor_6.0	X	74,499,442 - 74,518,419 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	X	75,210,915 - 75,245,214 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	X	69,878,539 - 70,018,507 (+)	NCBI		Celera
Cytogenetic Map	X	q22	NCBI

Variants

Variants in Jpx
328 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	267
Count of miRNA genes:	225
Interacting mature miRNAs:	242
Transcripts:	ENSMUST00000181020, ENSMUST00000182447, ENSMUST00000182486, ENSMUST00000183027
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1357433	Dbts2_m	diabetes 2 (mouse)			Not determined		X	7226295	150107038	Mouse
4141630	Gct6_m	granulosa cell tumorigenesis 6 (mouse)			Not determined			47179121	129764756	Mouse
13824980	Ferq1_m	genetic fertility QTL 1 (mouse)					X	54045360	148782996	Mouse
4141665	Mhysq2_m	male hybrid sterility QTL 2 (mouse)			Not determined			71453852	139203212	Mouse
1357500	Mdmsc6_m	modifier of muscularity 6 (mouse)			Not determined		X	75306671	109306758	Mouse
11075102	Modc2_m	modifier of Odc2 (mouse)					X	80189914	114190059	Mouse
4141803	Lmr30_m	leishmaniasis resistance 30 (mouse)			Not determined			85062606	119062720	Mouse
13208552	Wght12_m	weight 12 (mouse)					X	94043606	149782996	Mouse
13208556	Lgth14_m	body length 14 (mouse)					X	94043606	149782996	Mouse
1357823	Spha3_m	sperm head anomaly 3 (mouse)			Not determined		X	102055848	162758941	Mouse

Markers in Region

PMC196458P2

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	X	103,492,936 - 103,493,252	UniSTS	GRCm38
MGSCv37	X	100,688,275 - 100,688,591	UniSTS	GRCm37
Celera	X	90,394,428 - 90,394,744	UniSTS

D10Mit157.2

Mouse Assembly	Chr	Position (strand)	Source
Cytogenetic Map	6	D1	UniSTS
Cytogenetic Map	16	B4	UniSTS
Cytogenetic Map	18	E2	UniSTS
Cytogenetic Map	4	C3	UniSTS
Cytogenetic Map	7	B2	UniSTS
Cytogenetic Map	4	D2.3	UniSTS
Cytogenetic Map	11	E1	UniSTS
Cytogenetic Map	14	E2.2	UniSTS
Cytogenetic Map	4	C7	UniSTS
Cytogenetic Map	2	H4	UniSTS
Cytogenetic Map	1	F	UniSTS
Cytogenetic Map	6	C3	UniSTS
Cytogenetic Map	11	D	UniSTS
Cytogenetic Map	3	G2	UniSTS
Cytogenetic Map	17	A1	UniSTS
Cytogenetic Map	9	F2	UniSTS
Cytogenetic Map	12	F1	UniSTS
Cytogenetic Map	19	C2	UniSTS
Cytogenetic Map	3	B	UniSTS
Cytogenetic Map	8	C1	UniSTS
Cytogenetic Map	18	A2	UniSTS
Cytogenetic Map	3	F2	UniSTS
Cytogenetic Map	14	C3	UniSTS
Cytogenetic Map	8	E1	UniSTS
Cytogenetic Map	8	E2	UniSTS
Cytogenetic Map	5	B1	UniSTS
Cytogenetic Map	18	B1	UniSTS
Cytogenetic Map	9	C	UniSTS
Cytogenetic Map	14	C2	UniSTS
Cytogenetic Map	6	A1	UniSTS
Cytogenetic Map	10	B4	UniSTS
Cytogenetic Map	13	D2.1	UniSTS
Cytogenetic Map	5	E5	UniSTS
Cytogenetic Map	11	B1.3	UniSTS
Cytogenetic Map	4	D1	UniSTS
Cytogenetic Map	9	A5.2	UniSTS
Cytogenetic Map	3	F1	UniSTS
Cytogenetic Map	17	E3	UniSTS
Cytogenetic Map	11	B3	UniSTS
Cytogenetic Map	1	H4	UniSTS
Cytogenetic Map	6	A3	UniSTS
Cytogenetic Map	5	E4-E5	UniSTS
Cytogenetic Map	15	E1	UniSTS
Cytogenetic Map	13	D	UniSTS
Cytogenetic Map	14	B	UniSTS
Cytogenetic Map	14	D1	UniSTS
Cytogenetic Map	7	B4	UniSTS
Cytogenetic Map	8	D3	UniSTS
Cytogenetic Map	X	D	UniSTS
Cytogenetic Map	17	A3.3	UniSTS
Cytogenetic Map	7	E2	UniSTS
Cytogenetic Map	1	H2.3	UniSTS
Cytogenetic Map	7	A2	UniSTS
Cytogenetic Map	7	F3	UniSTS
Cytogenetic Map	9	F1	UniSTS
Cytogenetic Map	10	C1	UniSTS
Cytogenetic Map	4	E2	UniSTS
Cytogenetic Map	16	A1	UniSTS
Cytogenetic Map	8	B3.3	UniSTS
Cytogenetic Map	8	D2	UniSTS
Cytogenetic Map	3	D	UniSTS
Cytogenetic Map	15	D2	UniSTS
Cytogenetic Map	17	B1	UniSTS
Cytogenetic Map	7	A3	UniSTS
Cytogenetic Map	15	F1	UniSTS
Cytogenetic Map	16	B2	UniSTS
Cytogenetic Map	7	C	UniSTS
Cytogenetic Map	3	F2.1	UniSTS
Cytogenetic Map	6	F3	UniSTS
Cytogenetic Map	1	C4	UniSTS
Cytogenetic Map	11	E2	UniSTS
Cytogenetic Map	11	B5	UniSTS
Cytogenetic Map	9	F3	UniSTS
Cytogenetic Map	2	B	UniSTS
Cytogenetic Map	13	B3	UniSTS
Cytogenetic Map	9	A4	UniSTS
Cytogenetic Map	5	A3	UniSTS
Cytogenetic Map	2	H1	UniSTS
Cytogenetic Map	16	B1	UniSTS
Cytogenetic Map	1	A5	UniSTS
Cytogenetic Map	11	C	UniSTS
Cytogenetic Map	9	E1	UniSTS
Cytogenetic Map	6	G1	UniSTS
Cytogenetic Map	X	A2	UniSTS
Cytogenetic Map	13	B1	UniSTS
Cytogenetic Map	5	E2	UniSTS
Cytogenetic Map	12	C1	UniSTS
Cytogenetic Map	5	F	UniSTS
Cytogenetic Map	4	D3	UniSTS
Cytogenetic Map	10	C2	UniSTS
Cytogenetic Map	9	B	UniSTS
Cytogenetic Map	5	G2	UniSTS
Cytogenetic Map	7	F1	UniSTS
Cytogenetic Map	12	C3	UniSTS
Cytogenetic Map	10	A4	UniSTS
Cytogenetic Map	8	A2	UniSTS
Cytogenetic Map	18	A1	UniSTS
Cytogenetic Map	12	A1.1	UniSTS
Cytogenetic Map	1	C2	UniSTS
Cytogenetic Map	11	B2	UniSTS
Cytogenetic Map	6	E3	UniSTS
Cytogenetic Map	5	C3.3	UniSTS
Cytogenetic Map	1	B	UniSTS
Cytogenetic Map	17	A3.1	UniSTS
Cytogenetic Map	7	A1	UniSTS
Cytogenetic Map	2	E5	UniSTS
Cytogenetic Map	11	A1	UniSTS
Cytogenetic Map	4	B1	UniSTS
Cytogenetic Map	15	A2	UniSTS
Cytogenetic Map	8	C3	UniSTS
Cytogenetic Map	2	A3	UniSTS
Cytogenetic Map	5	G3	UniSTS
Cytogenetic Map	4	A3	UniSTS
Cytogenetic Map	2	H3	UniSTS
Cytogenetic Map	8	A1	UniSTS
Cytogenetic Map	8	A1.1	UniSTS
Cytogenetic Map	16	A3	UniSTS
Cytogenetic Map	10	B1	UniSTS
Cytogenetic Map	19	A	UniSTS
Cytogenetic Map	10	A1	UniSTS
Cytogenetic Map	13	D1	UniSTS
Cytogenetic Map	4	A1	UniSTS
Cytogenetic Map	9	A3	UniSTS
Cytogenetic Map	17	C	UniSTS
Cytogenetic Map	1	D	UniSTS
Cytogenetic Map	5	E3	UniSTS
Cytogenetic Map	15	D3	UniSTS
Cytogenetic Map	2	H2	UniSTS
Cytogenetic Map	7	D3	UniSTS
Cytogenetic Map	2	A1	UniSTS
Cytogenetic Map	14	C1	UniSTS
Cytogenetic Map	14	E5	UniSTS
Cytogenetic Map	10	C	UniSTS
Cytogenetic Map	18	B2	UniSTS
Cytogenetic Map	2	F1	UniSTS
Cytogenetic Map	10	D3	UniSTS
Cytogenetic Map	17	A2	UniSTS
Cytogenetic Map	2	C3	UniSTS
Cytogenetic Map	1	C3	UniSTS
Cytogenetic Map	17	B2	UniSTS
Cytogenetic Map	5	B2	UniSTS
Cytogenetic Map	5	G1	UniSTS
Cytogenetic Map	4	C6	UniSTS
Cytogenetic Map	13	C3	UniSTS
Cytogenetic Map	2	E1	UniSTS
Cytogenetic Map	17	A3.2-A3.3	UniSTS
Cytogenetic Map	19	C3	UniSTS
Cytogenetic Map	7	E3	UniSTS
Cytogenetic Map	13	C1	UniSTS
Cytogenetic Map	9	E3.1	UniSTS
Cytogenetic Map	15	E3	UniSTS
Cytogenetic Map	6	B1	UniSTS
Cytogenetic Map	X	E3	UniSTS
Cytogenetic Map	4	C4	UniSTS
Cytogenetic Map	3	E3	UniSTS
Cytogenetic Map	11	A4	UniSTS
Cytogenetic Map	4	C5	UniSTS
Cytogenetic Map	18	B3	UniSTS
Cytogenetic Map	9	A2	UniSTS
Cytogenetic Map	7	E1	UniSTS
Cytogenetic Map	5	D-E1	UniSTS
Cytogenetic Map	5	B3	UniSTS
Cytogenetic Map	13	A2-A3	UniSTS
Cytogenetic Map	5	A2	UniSTS
Cytogenetic Map	4	B3	UniSTS
Cytogenetic Map	1	E4	UniSTS
Cytogenetic Map	17	E4	UniSTS
Cytogenetic Map	1	G2	UniSTS
Cytogenetic Map	15	B3.1	UniSTS
Cytogenetic Map	12	E	UniSTS
Cytogenetic Map	X	A5	UniSTS
Cytogenetic Map	6	A3.3	UniSTS
Cytogenetic Map	6	G3	UniSTS
Cytogenetic Map	6	F2	UniSTS
Cytogenetic Map	5	C1	UniSTS
Cytogenetic Map	4	D2.1	UniSTS
Cytogenetic Map	4	A5	UniSTS
Cytogenetic Map	3	F2.2	UniSTS
Cytogenetic Map	1	E3-E4	UniSTS
Cytogenetic Map	9	F1-F3	UniSTS
Cytogenetic Map	1	C1.1	UniSTS
Cytogenetic Map	14	D2	UniSTS
Cytogenetic Map	12	A2	UniSTS
Cytogenetic Map	17	A3-B	UniSTS
Cytogenetic Map	7	F5	UniSTS
Cytogenetic Map	14	A3	UniSTS
Cytogenetic Map	5	G1.1	UniSTS
Cytogenetic Map	X	F2-F4	UniSTS
Cytogenetic Map	7	D2	UniSTS
Cytogenetic Map	2	F3	UniSTS
Cytogenetic Map	10	A3	UniSTS
Cytogenetic Map	X	A7.3	UniSTS
Cytogenetic Map	9	F1-F2	UniSTS
Cytogenetic Map	13	A3.2	UniSTS
Cytogenetic Map	10	A2	UniSTS
Cytogenetic Map	1	C1	UniSTS
Cytogenetic Map	1	A1	UniSTS
Cytogenetic Map	12	D3	UniSTS
Cytogenetic Map	1	A3-A5	UniSTS
Cytogenetic Map	2	A2	UniSTS
Cytogenetic Map	3	A1	UniSTS
Cytogenetic Map	X	A3.3	UniSTS
Cytogenetic Map	16	A-B1	UniSTS
Cytogenetic Map	1	D2.3	UniSTS
Cytogenetic Map	6	B2.3	UniSTS
Cytogenetic Map	2	G3	UniSTS
Cytogenetic Map	X	A2-A3.1	UniSTS
Cytogenetic Map	9	A5.3	UniSTS
Cytogenetic Map	14	A2-B	UniSTS
Cytogenetic Map	8	E1-E2	UniSTS
Cytogenetic Map	8	A3	UniSTS
Cytogenetic Map	1	G3-H1	UniSTS
Cytogenetic Map	8	B3-C1	UniSTS
Cytogenetic Map	19	C1	UniSTS
Cytogenetic Map	8	C5	UniSTS
Cytogenetic Map	8	A4	UniSTS
Cytogenetic Map	15	F3	UniSTS
Cytogenetic Map	14	E4	UniSTS
Cytogenetic Map	4	D2.2	UniSTS
Cytogenetic Map	X	F5	UniSTS
cM Map	10	40.0	UniSTS
Whitehead Genetic	10	33.9	UniSTS

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NR_015508	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AK007997	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK050201	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK137473	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK148110	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AL669964	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JN410358	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JN410359	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JN410360	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JN410361	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JN410362	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSMUST00000181020

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	X	102,537,158 - 102,550,031 (+)	Ensembl
GRCm38.p6 Ensembl	X	103,493,558 - 103,506,425 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000182447

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	X	102,537,376 - 102,546,843 (+)	Ensembl
GRCm38.p6 Ensembl	X	103,493,770 - 103,503,237 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000182486

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	X	102,537,163 - 102,546,848 (+)	Ensembl
GRCm38.p6 Ensembl	X	103,493,795 - 103,502,958 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000183027

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	X	102,537,162 - 102,538,372 (+)	Ensembl
GRCm38.p6 Ensembl	X	103,493,577 - 103,494,620 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000234103

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	X	102,537,325 - 102,574,121 (+)	Ensembl
GRCm38.p6 Ensembl	X	103,493,719 - 103,530,515 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000234173

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	X	102,537,179 - 102,609,302 (+)	Ensembl
GRCm38.p6 Ensembl	X	103,493,576 - 103,565,696 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000234244

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	X	102,537,170 - 102,574,316 (+)	Ensembl
GRCm38.p6 Ensembl	X	103,493,564 - 103,530,710 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000234690

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	X	102,537,162 - 102,553,623 (+)	Ensembl
GRCm38.p6 Ensembl	X	103,493,556 - 103,510,017 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000234815

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	X	102,537,187 - 102,574,316 (+)	Ensembl
GRCm38.p6 Ensembl	X	103,493,581 - 103,530,710 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000235019

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	X	102,543,953 - 102,546,847 (+)	Ensembl
GRCm38.p6 Ensembl	X	103,500,347 - 103,503,241 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000235041

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	X	102,537,170 - 102,553,623 (+)	Ensembl
GRCm38.p6 Ensembl	X	103,493,564 - 103,510,017 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000241012

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	X	102,537,178 - 102,546,848 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000241473

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	X	102,537,190 - 102,577,985 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000241553

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	X	102,537,179 - 102,570,256 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000242304

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	X	102,537,182 - 102,553,625 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000242648

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	X	102,537,190 - 102,569,028 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000243183

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	X	102,537,394 - 102,570,240 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000243315

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	X	102,537,190 - 102,570,240 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000243969

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	X	102,537,183 - 102,570,243 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000244298

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	X	102,537,190 - 102,569,447 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000244514

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	X	102,537,190 - 102,570,256 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000245161

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	X	102,537,227 - 102,569,221 (+)	Ensembl

RefSeq Acc Id:

NR_015508

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	X	102,537,164 - 102,550,031 (+)	NCBI
GRCm38	X	103,493,558 - 103,506,425 (+)	NCBI
MGSCv37	X	100,688,915 - 100,701,764 (+)	RGD
Celera	X	90,395,068 - 90,407,923 (+)	RGD

Sequence:

show sequence

CCCCCCCACGGCACCACCAGGCTTCTGTAACTTATAAAATGGCGGCGTCCACATGTATACGTCC
TTCCCGGGATTAGCCAGGCAGCTAGAGGATGACTTAATAAGGAGAGTGGAGAAACTGGCCAATT
AATGAACATGCCCTGATCATTAATCCACCACTGAAGGAAGTCAGAGCAGAAACTCAAGCAGGGA
CTTGAAGAAGAAACCATGGAGGAATACGGCTTGCTGGCTCACCTTTCAAGATGTTCAACTTGGC
TGCTCCAGCTACCATGCCTGCTGCCTGCCACCTCCACTCTGTCATGGAACTGTAAGCCCAAATA
AACTCTTTTTTTATCTAAGTTGCCTTGGCCACGTTTTATCACAATATCAGAAAAGTGACTGATA
CACAGGGTTTCTTACTGAACCTGGAGCTGGCCAGCAAGCCTGTGGGAGCCATCTGTTTCTATCC
ATGAGTGCTGCACTGTGCCGTCATGCTCAGCTTCTAAAGATGTGCTTGGGATCTGAACTCAAGT
CTTCATGCAAGCACTTTGCCCATTGAACTATCTCCCCCATCTCTCCCATGGCTCTTGGTAATGT
TGTTCTAAAATGTCACTCAAATAAATTTGTATCCTTTTGTAAAGGTAGTGTTTGAAGCCTATGA
AGGAGTCCAAGAATGGCCACTCCCAAACACAGTGCTTTATTATGCTTGCTTTATCAAATGAGAG
TAGAAGATACTAGGAAAGTATACTTTGGTCTGCTTATACAGCTCAGACCTGCTGAGGAATATAA
TAATCACCTCTATTCTCTTTCTTGAGTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTC
TCTTCTCTTCTCTTCTCTTCCCTTCCCTTCCCTTCTTTTCCTTTCCCTTTCCCTTTCCCCTTCC
CCTTCCCTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCCCCTTAGAGATAGT
GTAGCCCTGGCTGTCCTGGATCTCACTCTGTAGACCAGGCTGTCCCTGAACTCAGAGTGCATGC
ACCGCCATCCCTGGCTTTTCCTTAGGTTTTCATTAAACTGATTTGTGCCACAAGGGGAAATTGG
AAACTATATATTCCTAGATACACCTTTGCCCTCCCTACATCACTGCCTTAGCCTTAGGTTTCAT
TTAATAGTCCATAAAAGCCGGGCAGTGGTGGCACATGCCTTTAATCCCAGCACTTGGGAGGCAG
AGGCAGGCAGATCTCTGAGTTCGAGGCCAGTTTGGTCTACAGAGTGAGTTCCAGGACAGCCAGG
GCTACACAGAGAAACCCTGTCTAGAAAAAAATAAAAATTCCATAAAAATAGTACACAAGCAGAT
GTCTGTCTAGAGCAGTGGTTCTCAGCCTTCCTAATGCTGCTCGTGGCCCTTTAATGCAGTTCCT
CATGTTGCGGTGATTCTCAACCATAAAATTATTTCCATTGCCACTTCATAGCTGTAGTTTTGCT
ACTATTATGAATCACAATGTAAATATTTTCGGAGATAGAGGTTTGCCAAAGGGGTTGTCATCTA
TGGTAGTTCGAGTACCACTCACTGGTTTATAGGCTCAACAGAAAGTCCTAGCCCATTCTATGTT
TCTCTTAAGTTTATTGAATTCTCATAAAAACGACTTTACTACTCCCACTTAAAGTGTAAACATC
CTCCACTTTCCTGCTCCCCAGTGGAAAATAGGGTTACATGTAAGCTTCTAAATTAAATGAGACT
CGTGGATAGCTACCTTTAATTTGCAAGCTTTTTCTCTTATTCAATCTGTCACTTCCTACTAGTG
AGCTTTCACATAAGGCAGACTAAGTGATGAGTTAGACTAGTTTAGTACCTTCAGCCAGTTAGAA
TTTCCTGTTTGTTGCTTTCCACTCTTAGGCTTTTGCCTTCCCCCATTGTGTTCCTAATCAGTTT
TCTTGAGGATGTCTTTCTGGGCTCTGTCTTCCTTCATCCTGGCCTAAGCCTCTGCCCCACTGCT
CTGGAGATGAAGCTGCGGCTTGCTTTTCTCAGAGTGATACATCTTTGTAGGGTGTTTGACAGGG
AGCCATTGCCTCTGGTTTCCTAAATAACTCCATTACTCTCAGGTGGTTTTTGCGCTGTGTCTCA
GAGCTCTTGTTCCACGTAACTGTCTTTACTTCTGTAGTAAGCCTTATGTTGTAGTGCTGTACTG
TAGTGCTCCTTAGCCTTGTGACTGGCAGGGAGTGTGCCTCATCTGCTGGTTTATTATATCTCAG
TCTTGGATTGTGTGGTGGATTCCTGCTCCCTACTCCTGCCCCCTGCTCCCTTTCCCAAATTTAG
ACACAGTATTTATTTCTACCTTTTCCCCGGAACTGTTTTTATTTAACCCCTTCCTGTCCATTCA
CCAGGGTCAGATGGCTTTCACAACTGGCCAGAGGCTGTAGTATTTGTTGCCCTTCTTGTATGGA
ATAAGGATTTTGTTCTGTATAGGAGAGGAAGATCTAAGTAGGGCTTCTTTGTGTGTGTGCTTCT
GTGTGGATTTTTTTTCCAACTCTCCCCACACTGTTTATGCCTAAAATGTGTGGTCCGTGGGTCA
TTTCCCAGTGTTCTCCTCAACCTTCTGTGTGCCCTGAGCACATAAATGAAGAAAATCCCAGAAG
GGAGAACAAATTTCCTCATTTTTTATGCTTTTGATTCTTGTGCTTGCTTTTGTTTGTTTGTTTG
TTTGGTTGGTTGGTTTGGTGTTTTGAGACAGGGTTTCTCTGTGCAGTCCTGGCTGTCCTGGAAC
TCACTCTGTAGACCACGATGGCCTTGAACTCAGAAATCCATCTGCTTCTGCCTCCCAAGTGATG
GGATTAAAGTCGTTGCTCCACCACTGCCCGACTATTCTTGTGCTTGTTAACACATGTCCCAGCC
ACTTCTCTTGATGTCTTAGTGAAGAGGTGGTCAGATCCACTGGAACTGAAATTGTGAGCTGCCA
TGTGGATGCTGGGAATGAAGGCAGGTCCTCTGGAACAGCAATGAGCCATCTCTCCAGCCCCTAA
TTATCAATTTACCCTTTACAATCTCTACTTTTTTTCTCCTGTGTGATAGGGTCTTATGTAGTCC
AGAATGGCTCTTGCTGCCATCACCTCCCCAGTGCTTCGTGTACTCTAAGATAGTGATGCTTACC
TTGTAGTTCGCCTTCACTATGTCTATCCCTAGCCATTTCTATGAGGAGCCTGGGTACTTCCTGT
TGAAAAACAGATTTAGAAGGTATTGTGTGAGTATTGAGTGTCCTTTAACCGGTGAAGCTTCATT
GCTTCTGGACTAAGCAGCAACCTAGAAAATACATGTATATAGTAATGCTGGTGCCTGGTTAATT
ATCTCAGTGTGTAGCTATCTGTGTTATTTATGAAAATAAACATGAATACACGGAGGACTCTGTA
ATGGAGGTAGTATTGTTTGTTTGTTTGTTTTTTTAACTTTCCTCTGACCATAGGAAAACTGGTC
CTGAAATGTCTAGTCACTTCTGCATTTAACTCTGTGTGTAAAATAGTCTCCTGGTCGCTGATGC
ATGTGGAGAAGTCCAGATTTACCAGCTAGAACTAGGACTGTTCCTTCAAAGCCATTTCCAAACA
ACGCACAAGTTTTCCTTTTTTTTTCTCCATAGATGTCATATAAAGTTTCTTTAGTACCTTTAAA
TCTAGTATTCATTAGAATGAATATTTGTATAATGAATGAGTGTTTTGTTTTGTTTTGAAATCCG
GTCAATTGTTTCACCATCTTTTGTTGAAAGATCACCGTTTACCGGTTGTATGATGATTGCATCT
CTGTGAAAATAAATTCTCAAATCGTG

hide sequence

Promoters

RGD ID:

13681136

Promoter ID:

EPDNEW_M24717

Type:

initiation region

Name:

Jpx_1

Description:

Mus musculus Jpx transcript, Xist activator (non-protein coding), long non-coding RNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	X	103,493,573 - 103,493,633	EPDNEW

RGD ID:

15095132

Promoter ID:

EPDNEWNC_M3050

Type:

multiple initiation site

Name:

Jpx_1

Description:

Jpx transcript, Xist activator (non-protein coding)[Source:MGI Symbol;Acc:MGI:2180008]

SO ACC ID:

SO:0000170

Source:

EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	X	103,493,584 - 103,493,644	EPDNEWNC

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:2180008	AgrOrtholog
Ensembl Genes	ENSMUSG00000097571	Ensembl, ENTREZGENE
Ensembl Transcript	ENSMUST00000181020	ENTREZGENE
MGD	MGI:2180008	ENTREZGENE
NCBI Gene	70252	ENTREZGENE
PhenoGen	Jpx	PhenoGen
RNAcentral	URS000076E63E	RNACentral

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2014-09-17	Jpx	Jpx transcript, Xist activator (non-protein coding)	2010000I03Rik	RIKEN cDNA 2010000I03 gene	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar