Ctcflos (CCCTC-binding factor like, opposite strand) - Rat Genome Database

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Gene: Ctcflos (CCCTC-binding factor like, opposite strand) Mus musculus
Analyze
Symbol: Ctcflos
Name: CCCTC-binding factor like, opposite strand (Ensembl:CCCTC-binding factor (zinc finger protein)-like, opposite strand)
RGD ID: 1613519
MGI Page MGI
Description: INTERACTS WITH (1->4)-beta-D-glucan; 2,3,7,8-tetrachlorodibenzodioxine; 4-hydroxyphenyl retinamide
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: 1300015D01Rik; A530094K13; CCCTC-binding factor (zinc finger protein)-like, opposite strand; hypothetical protein LOC74161; RIKEN cDNA 1300015D01 gene
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392172,966,542 - 172,974,997 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2172,952,577 - 172,980,062 (+)EnsemblGRCm39 Ensembl
GRCm382173,124,749 - 173,133,204 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2173,110,818 - 173,133,204 (+)EnsemblGRCm38mm10GRCm38
MGSCv372172,950,250 - 172,958,705 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera2179,089,967 - 179,098,433 (+)NCBICelera
Cytogenetic Map2H3NCBI
cM Map295.75NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:24316575   PMID:34056831   PMID:36470542  


Genomics

Variants

.
Variants in Ctcflos
399 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:586
Count of miRNA genes:400
Interacting mature miRNAs:458
Transcripts:ENSMUST00000142165, ENSMUST00000142207, ENSMUST00000144256, ENSMUST00000153523
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
5491196Mobq6_mmultigenic obesity QTL 6 (mouse)Not determined285724269180896594Mouse
1301618Bglu1_mblood glucose level 1 (mouse)Not determined2117942930174324863Mouse
11341717Rvfs1_mRift Valley fever susceptibility 1 (mouse)2135432544173449616Mouse
1300846Pbwg11_mpostnatal body weight growth 11 (mouse)Not determined2138966600172966729Mouse
11353826Bdln10_mbody length 10 (mouse)2140441482174441482Mouse
12801461Intim1_mintima modifier 1 (mouse)2142428347176428450Mouse
12801456Intmrm1_mintima/media ratio modifier 1 (mouse)2142428347176428450Mouse
1301783Bhr1_mbronchial hyperresponsiveness 1 (mouse)Not determined2142593476178442452Mouse
1300867Lore2_mloss of righting induced by ethanol 2 (mouse)Not determined2144515861180896594Mouse
1302013Tbbmd3_mtotal body bone mineral density 3 (mouse)Not determined2145196949179197085Mouse
1300806Aod4_mautoimmune ovarian dysgenesis 4 (mouse)Not determined2145228719179228841Mouse
1301865Hdlq19_mHDL QTL 19 (mouse)Not determined2145518775179518926Mouse
12790983Bwq12_mbody weight QTL 12 (mouse)2148238204181755017Mouse
4142211Nilac3_mnicotine induced locomotor activity 3 (mouse)Not determined2148664893181755017Mouse
1558917Gct8_mgranulosa cell tumorigenesis 8 (mouse)Not determined2149236907181755017Mouse
1300751Bdt1_mbone density traits 1 (mouse)Not determined2149988902181755017Mouse
1301085Lrnx10_mlearning-contextual 10 (mouse)Not determined2150212221181755017Mouse
11038701Ltpr2e_mLeishmania tropica response 2e (mouse)2150212221181755017Mouse
4142450Lmr16_mleishmaniasis resistance 16 (mouse)Not determined2150212221181755017Mouse
12910520Scgq3_mspontaneous crescentic glomerulonephritis QTL 3 (mouse)2151709273174389124Mouse
1301019Bmd6_mbone mineral density 6 (mouse)Not determined2151778297181755017Mouse
14747002Mancz3_mmandible centroid size 3 (mouse)2152329820181755017Mouse
1300622Cfld1_mcystic fibrosis lung disease 1 (mouse)Not determined2155823920181755017Mouse
1357537Lith12_mlithogenic gene 12 (mouse)Not determined2156196464181755017Mouse
1300688Nidd2k_mNidd2 on KK-A (mouse)Not determined2158078337178442452Mouse
1302003Sluc17_msusceptibility to lung cancer 17 (mouse)Not determined2162433493181755017Mouse
1558991Tailq4_mtail length QTL 4 (mouse)Not determined2162736926178442452Mouse
1357435Epfq2_mepididymal fat pad weight QTL 2 (mouse)Not determined2162736926178442452Mouse
1301677Alcp6_malcohol preference locus 6 (mouse)Not determined2163486407181755017Mouse
1301348Alcp5_malcohol preference locus 5 (mouse)Not determined2163486407181755017Mouse
1300676Prdt2_mprion disease incubation time 2 (mouse)Not determined2164515154181755017Mouse
12738409Lfibq1_mliver fibrosis QTL 1 (mouse)2167716420179207088Mouse
12910811Pwbwq3_mpre-weaning body weight QTL 3 (mouse)2169794802178920791Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000142165
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2172,961,531 - 172,971,103 (+)Ensembl
GRCm38.p6 Ensembl2173,119,738 - 173,129,310 (+)Ensembl
RefSeq Acc Id: ENSMUST00000142207
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2172,952,619 - 172,974,064 (+)Ensembl
GRCm38.p6 Ensembl2173,110,835 - 173,132,270 (+)Ensembl
RefSeq Acc Id: ENSMUST00000144256
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2172,952,611 - 172,956,502 (+)Ensembl
GRCm38.p6 Ensembl2173,110,818 - 173,114,709 (+)Ensembl
RefSeq Acc Id: ENSMUST00000153523
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2172,966,542 - 172,974,997 (+)Ensembl
GRCm38.p6 Ensembl2173,124,749 - 173,133,204 (+)Ensembl
RefSeq Acc Id: ENSMUST00000246778
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2172,952,577 - 172,980,062 (+)Ensembl
RefSeq Acc Id: ENSMUST00000247677
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2172,952,598 - 172,980,062 (+)Ensembl
RefSeq Acc Id: NR_040321
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392172,966,542 - 172,974,997 (+)NCBI
GRCm382173,124,749 - 173,133,204 (+)ENTREZGENE
Celera2179,089,967 - 179,098,433 (+)ENTREZGENE
cM Map2 ENTREZGENE
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000087382 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000153523 ENTREZGENE
MGD MGI:1921411 ENTREZGENE
NCBI Gene 74161 ENTREZGENE
PhenoGen Ctcflos PhenoGen
RNAcentral URS000075EB54 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-07-04 Ctcflos  CCCTC-binding factor like, opposite strand  Ctcflos  CCCTC-binding factor (zinc finger protein)-like, opposite strand  Symbol and/or name change 5135510 APPROVED
2013-12-03 Ctcflos  CCCTC-binding factor (zinc finger protein)-like, opposite strand  1300015D01Rik  RIKEN cDNA 1300015D01 gene  Symbol and/or name change 5135510 APPROVED