1700003L19Rik (RIKEN cDNA 1700003L19 gene) - Rat Genome Database

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Gene: 1700003L19Rik (RIKEN cDNA 1700003L19 gene) Mus musculus
Analyze
Symbol: 1700003L19Rik
Name: RIKEN cDNA 1700003L19 gene
RGD ID: 1613490
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC75493
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391612,629,254 - 12,666,517 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1612,618,443 - 12,666,517 (+)EnsemblGRCm39 Ensembl
GRCm381612,811,390 - 12,848,653 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1612,800,579 - 12,848,653 (+)EnsemblGRCm38mm10GRCm38
Celera1613,426,808 - 13,463,303 (+)NCBICelera
Cytogenetic Map16A1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:24316575  


Genomics

Variants

.
Variants in 1700003L19Rik
1161 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141060Pbwg19_mpostnatal body weight growth 19 (mouse)Not determined16120780888Mouse
1300632Loca2_mlocomotor activity 2 (mouse)Not determined16122500574Mouse
10043879Adip25_madiposity 25 (mouse)Not determined16122520318Mouse
1301575Tanidd3_mtally ho associated non-insulin dependednt diabetes mellitus 3 (mouse)Not determined16122897739Mouse
4141468Nhdlq10_mnon-HDL QTL 10 (mouse)Not determined16124263853Mouse
1301970Heal11_mwound healing/regeneration 11 (mouse)Not determined16124263853Mouse
1301384Dice1_mdetermination of interleukin 4 commitment 1 (mouse)Not determined16128434358Mouse
10402497Lmr23_mleishmaniasis resistance 23 (mouse)Not determined16129674200Mouse
1301559Bbaa19_mB.burgdorferi-associated arthritis 19 (mouse)Not determined16130066977Mouse
10412289Ppsl_mplasma P-selectin levels (mouse)Not determined16130814572Mouse
27095908Scvln7_msacral vertebrae length 2, 5 week (mouse)16331786439820362Mouse
27226768Tibl9_mtibia length 9, 5 week (mouse)16331786451420363Mouse
27226785Feml12_mfemur length 12, 5 week (mouse)16331786464620363Mouse
1302106Rapop1_mradiation-induced apoptosis 1 (mouse)Not determined16378077915731053Mouse
26884432Zlq7_mzygomatic length QTL 7, 10 week (mouse)16381786464620363Mouse
38501069Tip4_mtuberculosis immunophenotype 4, IFN-g level (mouse)16431786444520363Mouse
1301443Mopkd2_mmodifier of polycystic kidney disease progression 2 (mouse)Not determined16464631438646414Mouse
1300656Bgeq15_mbody growth early QTL 15 (mouse)Not determined16577525239775440Mouse
1301945Skl7_mskeletal size (tail length) 7 (mouse)Not determined16577525239775440Mouse
1300943Skts9_mskin tumor susceptibility 9 (mouse)Not determined16577525239775440Mouse
1300987Skull23_mskull morphology 23 (mouse)Not determined16577525239775440Mouse
4141010Bbq1_mbrain and behavior QTL 1 (mouse)Not determined16647700935021216Mouse
1357763Lp1_mlymphocyte proliferation 1 (mouse)Not determined16654297965466552Mouse
4142460Nilac10_mnicotine induced locomotor activity 10 (mouse)Not determined16713690629225471Mouse
11251724Ewc6_methanol withdrawal and consumption 6 (mouse)16822605242226052Mouse
26884376Skwq4_mskull length QTL 4, 5 week (mouse)16841786490896888Mouse
10043978Obq35_mobesity QTL 35 (mouse)Not determined16988163143881631Mouse
1301086Lprm5_mlymphoproliferation modifier 5 (mouse)Not determined161184882445848923Mouse
1301841Lrnx9_mlearning-contextual 9 (mouse)Not determined161222536046225471Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000190074
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1612,629,254 - 12,666,517 (+)Ensembl
GRCm38.p6 Ensembl1612,811,390 - 12,848,653 (+)Ensembl
RefSeq Acc Id: ENSMUST00000231680
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1612,618,443 - 12,636,162 (+)Ensembl
GRCm38.p6 Ensembl1612,800,579 - 12,818,298 (+)Ensembl
RefSeq Acc Id: NR_040507
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391612,629,254 - 12,666,517 (+)NCBI
GRCm381612,811,390 - 12,848,653 (+)ENTREZGENE
Celera1613,426,808 - 13,463,303 (+)ENTREZGENE
cM Map16 ENTREZGENE
Sequence:
Promoters
RGD ID:8685480
Promoter ID:EPDNEW_M20771
Type:single initiation site
Name:1700003L19Rik_1
Description:Mus musculus RIKEN cDNA 1700003L19 gene , long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381612,811,392 - 12,811,452EPDNEW
RGD ID:15094640
Promoter ID:EPDNEWNC_M2561
Type:single initiation site
Name:1700003L19Rik_1
Description:RIKEN cDNA 1700003L19 gene [Source:MGISymbol;Acc:MGI:1922743]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381612,811,392 - 12,811,452EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000101565 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000190074 ENTREZGENE
MGD MGI:1922743 ENTREZGENE
NCBI Gene 75493 ENTREZGENE
PhenoGen 1700003L19Rik PhenoGen
RNAcentral URS000075E5FB RNACentral