4930593C16Rik (RIKEN cDNA 4930593C16 gene) - Rat Genome Database
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Gene: 4930593C16Rik (RIKEN cDNA 4930593C16 gene) Mus musculus
Analyze
Symbol: 4930593C16Rik
Name: RIKEN cDNA 4930593C16 gene
RGD ID: 1613424
MGI Page MGI
Description:
Type: ncrna
RefSeq Status: VALIDATED
Also known as: hypothetical protein LOC78060
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399120,753,521 - 120,759,868 (-)NCBIGRCm39mm39
GRCm389120,924,455 - 120,930,802 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9120,924,452 - 120,930,804 (-)EnsemblGRCm38mm10GRCm38
Celera9121,395,139 - 121,401,492 (-)NCBICelera
Cytogenetic Map9F4NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:24316575  


Genomics


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12880422V25Dq6_mvitamin D inactive form serum level QTL 6 (mouse)987800000121800000Mouse
10412242Alpq8_malcohol preference QTL 8 (mouse)Not determined989284925123284925Mouse
1301649Psl1_mpromotion susceptibility QTL 1 (mouse)Not determined989412277123412396Mouse
18182932Metl3_mmetabolite locus 3, N-acetylglutamate (mouse)989563342123563342Mouse
12910770Splic1_mspleen iron content 1 (mouse)991413879124595110Mouse
12910772Lvic6_mliver iron content 6 (mouse)991413879124595110Mouse
12910773Splic3_mspleen iron content 3 (mouse)991413879124595110Mouse
1558767Skmw11_mskeletal muscle weight 11 (mouse)Not determined991641084124595110Mouse
13463474Hbbcq5_mhemoglobin concentration QTL 5 (mouse)991641084124595110Mouse
13463475Hctq7_mhematocrit QTL 7 (mouse)991641084124595110Mouse
13463477Rbc9_mred blood cell count 9 (mouse)991641084124595110Mouse
13463478Mchq18_mmean corpuscular hemoglobin QTL 18 (mouse)991641084124595110Mouse
13463480Mchcq2_mmean corpuscular hemoglobin concentration QTL 2 (mouse)991641084124595110Mouse
12904937Edlmmq9_mextensor digitorum longus muscle mass QTL 9 (mouse)991683173124595110Mouse
12904947Tammq7_mtibialis anterior muscle mass QTL 7 (mouse)991683173124595110Mouse
12904961Gmmq7_mgastrocnemius muscle mass QTL 7 (mouse)991683173124595110Mouse
1302001Bdln5_mbody length 5 (mouse)Not determined993762590124595110Mouse
1301484Bwq6_mbody weight (mouse)Not determined993762590124595110Mouse
14746992Manh67_mmandible shape 67 (mouse)994036768124595110Mouse
11537364Cnes5_mC. neoformans susceptibility locus 5 (mouse)996917590124595110Mouse
1301297Lcho1_mliver cholesterol 1 (mouse)Not determined9101060861124595110Mouse
1357627Tgq2_mtriglyceride QTL 2 (mouse)Not determined9102000187124595110Mouse
1357648Obq18_mobesity QTL 18 (mouse)Not determined9102000187124595110Mouse
1301789Pbwg4_mpostnatal body weight growth 4 (mouse)Not determined9103289445124595110Mouse
10412290Pvacm1l_mplasma vascular cell adhesion molecule 1 levels (mouse)Not determined9103289445124595110Mouse
12879896Berr3_mberghei resistance locus 3 (mouse)9103289445124595110Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:57
Count of miRNA genes:57
Interacting mature miRNAs:57
Transcripts:ENSMUST00000140589
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000140589
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9120,924,452 - 120,930,804 (-)Ensembl
RefSeq Acc Id: ENSMUST00000214011
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9120,924,532 - 120,930,767 (-)Ensembl
RefSeq Acc Id: NR_040753
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399120,753,521 - 120,759,868 (-)NCBI
GRCm389120,924,455 - 120,930,802 (-)ENTREZGENE
Celera9121,395,139 - 121,401,492 (-)ENTREZGENE
cM Map9 ENTREZGENE
Sequence:
Promoters
RGD ID:8671240
Promoter ID:EPDNEW_M13651
Type:single initiation site
Name:4930593C16Rik_1
Description:Mus musculus RIKEN cDNA 4930593C16 gene , long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389120,930,803 - 120,930,863EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000086365 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000140589 ENTREZGENE
MGD MGI:1925310 ENTREZGENE
NCBI Gene 78060 ENTREZGENE
PhenoGen 4930593C16Rik PhenoGen
RNAcentral URS000075A550 RNACentral