AV064505 (expressed sequence AV064505) - Rat Genome Database

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Gene: AV064505 (expressed sequence AV064505) Mus musculus
Analyze
Symbol: AV064505
Name: expressed sequence AV064505
RGD ID: 1613330
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC102722; uncharacterized protein LOC102722
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3997,669,430 - 7,695,632 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl97,669,430 - 7,695,632 (-)EnsemblGRCm39 Ensembl
GRCm3897,669,429 - 7,695,631 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl97,669,429 - 7,695,631 (-)EnsemblGRCm38mm10GRCm38
Celera95,060,109 - 5,086,310 (-)NCBICelera
Cytogenetic Map9A1NCBI
cM Map92.46NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:24316575  


Genomics

Variants

.
Variants in AV064505
916 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:61
Count of miRNA genes:55
Interacting mature miRNAs:61
Transcripts:ENSMUST00000124572
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142326Tgq19_mtriglyceride QTL 19 (mouse)Not determined121060750Mouse
1300899Chol6_mcholesterol 6 (mouse)Not determined9129902913Mouse
13434920Dcollq1_mdifferential colonization level QTL 1 (mouse)9130341840Mouse

Markers in Region
AV064505  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3897,669,529 - 7,669,618UniSTSGRCm38
MGSCv3797,669,529 - 7,669,618UniSTSGRCm37
Celera95,060,209 - 5,060,298UniSTS
Cytogenetic Map9A1UniSTS
Whitehead/MRC_RH991.94UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000124572
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl97,669,430 - 7,695,632 (-)Ensembl
GRCm38.p6 Ensembl97,669,429 - 7,695,631 (-)Ensembl
RefSeq Acc Id: NR_126562
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3997,669,430 - 7,695,632 (-)NCBI
GRCm3897,669,429 - 7,695,631 (-)NCBI
Celera95,060,109 - 5,086,310 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000086381 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000124572 ENTREZGENE
MGD MGI:2143259 ENTREZGENE
NCBI Gene 102722 ENTREZGENE
PhenoGen AV064505 PhenoGen
RNAcentral URS00007642C7 RNACentral