4930577N17Rik (RIKEN cDNA 4930577N17 gene) - Rat Genome Database

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Gene: 4930577N17Rik (RIKEN cDNA 4930577N17 gene) Mus musculus
Analyze
Symbol: 4930577N17Rik
Name: RIKEN cDNA 4930577N17 gene
RGD ID: 1613182
MGI Page MGI
Description:
Type: ncrna (Ensembl: TEC)
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC67746; uncharacterized protein LOC67746
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39351,184,182 - 51,185,828 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl351,184,180 - 51,185,804 (+)EnsemblGRCm39 Ensembl
GRCm38351,276,761 - 51,278,407 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl351,276,759 - 51,278,383 (+)EnsemblGRCm38mm10GRCm38
Celera351,003,657 - 51,005,240 (+)NCBICelera
Cytogenetic Map3CNCBI
cM Map322.25NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073  


Genomics

Variants

.
Variants in 4930577N17Rik
104 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:161
Count of miRNA genes:154
Interacting mature miRNAs:159
Transcripts:ENSMUST00000139771
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
1558925Hivan1_mHIV-associated nephropathy 1 (mouse)Not determined3758617468716946Mouse
4142399Aec1_mautoimmune exocrinopathy 1 (mouse)Not determined7586174102690034Mouse
4141116Lgaq4_mlate growth adjusted QTL 4 (mouse)Not determined1024922183184946Mouse
4141255W10q3_mweight 10 weeks QTL 3 (mouse)Not determined1024922183184946Mouse
4141563Lgq3_mlate growth QTL 3 (mouse)Not determined1024922183184946Mouse
39128206Lwq18_mliver weight QTL 18 (mouse)31024922183184946Mouse
1357584Splq6_mspleen weight QTL 6 (mouse)Not determined31024922183184946Mouse
1357440Hrtpq1_mheart weight percentage QTL 1 (mouse)Not determined31024922183184946Mouse
26884427Cvht4_mcranial vault height 4, 10 week (mouse)316054164109707316Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316504164130163649Mouse
4142092Tgq13_mtriglyceride QTL 13 (mouse)Not determined1828816852288168Mouse
1301114Ssial2_msusceptibility to sialadenitis 2 (mouse)Not determined32017486254180103Mouse
26884422Cvht7_mcranial vault height 7, 16 week (mouse)328954149118893649Mouse
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330067588147304689Mouse
1300961Bh4p_mbar holding four paws (mouse)Not determined33183785465837997Mouse
12910778Pwgrq13_mpost-weaning growth rate QTL 13 (mouse)33263576058017363Mouse
12910781Pwgrq12_mpost-weaning growth rate QTL 12 (mouse)33263576058017363Mouse
10412073Ssen2_msuseptibility to Sendai virus 2 (mouse)Not determined33353546567535615Mouse
9587784Afw13_mabdominal fat weight QTL 13 (mouse)Not determined33375204567752228Mouse
10043882Bwtq13_mbody weight QTL 13 (mouse)Not determined33375204567752228Mouse
15039332Nmrs6_mNAFLD-associated magnetic resonance shift 6 (mouse)33417074168170741Mouse
15039336Nmrs2_mNAFLD-associated magnetic resonance shift 2 (mouse)33457610368576103Mouse
18337272Bmd46_mbone mineral density 46, males (mouse)33540742169407421Mouse
14746977Manh53_mmandible shape 53 (mouse)33592528069925280Mouse
1301705Sles3_msystemic lupus erythmatosus suppressor 3 (mouse)Not determined337174862143353183Mouse
1300587Aod2_mautoimmune ovarian dysgenesis 2 (mouse)Not determined33717974268716946Mouse
11041901Lmr11b_mleishmaniasis resistance 11b (mouse)33970410273704231Mouse
11039513Ltpr3a_mLeishmania tropica response 3a (mouse)33970410273704231Mouse
1301585Cd4ts1_mCD4 T cell subset 1 (mouse)Not determined33970410273704231Mouse
10755516Amzn1_manatomical modifier of Zfp423 1 (mouse)33970410273704231Mouse
13208566Bmiq5_mbody mass index QTL 5 (mouse)340954435115793649Mouse
26884389Skwq10_mskull length QTL 10, 16 week (mouse)34395443565307421Mouse
26884380Skwq1_mskull length QTL 1, 5 week (mouse)343954435101607316Mouse
4141079Ath23_matherosclerosis 23 (mouse)Not determined4935758183357581Mouse
1300895Hdl5_mHDL level 5 (mouse)Not determined34949500583495118Mouse
1301824Susp_msuppressor of superoxide production (mouse)Not determined34949500583495118Mouse
13801030Tpcq1_mtotal plasma cholesterol QTL 1 (mouse)35025444952207421Mouse

Markers in Region
RH139034  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38351,277,664 - 51,277,811UniSTSGRCm38
MGSCv37351,081,586 - 51,081,733UniSTSGRCm37
Celera351,004,497 - 51,004,644UniSTS
Cytogenetic Map3CUniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000139771
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl351,184,180 - 51,185,804 (+)Ensembl
GRCm38.p6 Ensembl351,276,759 - 51,278,383 (+)Ensembl
RefSeq Acc Id: NR_073429
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39351,184,182 - 51,185,828 (+)NCBI
GRCm38351,276,761 - 51,278,407 (+)NCBI
Celera351,003,657 - 51,005,240 (+)NCBI
Sequence:
Protein Sequences
GenBank Protein BAB30183 (Get FASTA)   NCBI Sequence Viewer  
  EDL35201 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences

Promoters
RGD ID:6880604
Promoter ID:EPDNEW_M3752
Type:single initiation site
Name:4930577N17Rik_1
Description:Mus musculus RIKEN cDNA 4930577N17 gene , long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38351,276,854 - 51,276,914EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000087440 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000139771 ENTREZGENE
MGD MGI:1914996 ENTREZGENE
NCBI Gene 67746 ENTREZGENE
PhenoGen 4930577N17Rik PhenoGen
RNAcentral URS000075EE8B RNACentral
UniProt Q9CUF6_MOUSE UniProtKB/TrEMBL