4833411C07Rik (RIKEN cDNA 4833411C07 gene)

Gene: 4833411C07Rik (RIKEN cDNA 4833411C07 gene) Mus musculus

Analyze

Symbol:

4833411C07Rik

Name:

RIKEN cDNA 4833411C07 gene

RGD ID:

1613143

MGI Page

MGI

Description:

ASSOCIATED WITH impaired glucose tolerance; increased circulating glucose level; insulin resistance

Type:

ncrna (Ensembl: lncRNA)

RefSeq Status:

VALIDATED

Previously known as:

hypothetical protein LOC71624

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	10,949,922 - 10,952,334 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	10,949,871 - 10,973,631 (+)	Ensembl		GRCm39 Ensembl
GRCm38	8	10,899,922 - 10,902,334 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	10,899,922 - 10,903,893 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	10,899,922 - 10,903,889 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
Celera	8	11,073,320 - 11,077,186 (+)	NCBI		Celera
Cytogenetic Map	8	A1.1	NCBI
cM Map	8	5.28	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

impaired glucose tolerance (IAGP)

increased circulating glucose level (IAGP)

insulin resistance (IAGP)

References

Additional References at PubMed

PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:12477932	PMID:16141072	PMID:16141073	PMID:24200680	PMID:27899360	PMID:32005828

Genomics

Variants

Variants in 4833411C07Rik
78 total Variants

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
13432571	Scvg1_m	subcutaneous vessel growth QTL 1 (mouse)					8	1	24751082	Mouse
11533914	Mts5_m	mammary tumor susceptibility 5 (mouse)					8	1	30447432	Mouse
4140978	Nilac5_m	nicotine induced locomotor activity 5 (mouse)			Not determined		8	1	31773288	Mouse
27226756	Femd2_m	femur midshaft diameter 2, 5 week (mouse)					8	4950000	35067154	Mouse
1357525	Pnhdlc3_m	plasma non-HDL cholesterol 3 (mouse)			Not determined		8	7212499	23753815	Mouse
1301532	Scc8_m	colon tumor susceptibility 8 (mouse)			Not determined		8	7212499	35110107	Mouse
1300906	Ap8q_m	alcohol preference 8 QTL (mouse)			Not determined		8	7984189	41984342	Mouse
10412209	Cypr7_m	cytokine production 7 (mouse)			Not determined		8	8103201	42103372	Mouse
1301929	Eae24_m	susceptibility to experimental allergic encephalomyelitis 24 (mouse)			Not determined		8	8103201	42103372	Mouse
1301128	Sluc20_m	susceptibility to lung cancer 20 (mouse)			Not determined		8	8103201	42103372	Mouse

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NR_102285	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC138677	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK014677	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK050245	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC052524	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BY714173	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	KY468175	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	KY468176	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSMUST00000207499

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	10,949,901 - 10,952,463 (+)	Ensembl
GRCm38.p6 Ensembl	8	10,899,922 - 10,902,463 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000207914

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	10,949,916 - 10,953,893 (+)	Ensembl
GRCm38.p6 Ensembl	8	10,899,937 - 10,903,893 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000240571

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	10,949,894 - 10,952,341 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000240572

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	10,949,933 - 10,953,214 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000240573

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	10,949,918 - 10,958,413 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000240574

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	10,949,922 - 10,953,870 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000240575

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	10,949,953 - 10,956,152 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000241186

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	10,949,922 - 10,973,625 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000241219

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	10,949,952 - 10,958,031 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000241614

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	10,949,871 - 10,973,631 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000243257

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	10,949,922 - 10,952,341 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000243909

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	10,949,922 - 10,950,558 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000244142

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	10,949,922 - 10,950,562 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000244347

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	10,949,914 - 10,973,629 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000245988

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	10,949,922 - 10,952,344 (+)	Ensembl

RefSeq Acc Id:

NR_102285

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	10,949,922 - 10,952,334 (+)	NCBI
GRCm38	8	10,899,922 - 10,902,334 (+)	NCBI
Celera	8	11,073,320 - 11,075,631 (+)	NCBI

Sequence:

show sequence

AGAAATAGGACAGCAGCCATTCCAGGTAGCAGGGGAATGGCCCTTCCTCACTTTCTGACGATTT
TTTTTTACGCTCTTCTGTCTTTGGGGAAAGCGGCAGGCTAAGGAAAACCGGGAAGCCACGCAGA
CCTCTGCCTGTGACACAGCACGTGGGCTGGCCTCTGGCAACTGACAGAGGGAACATTGCTGCTG
ATGCGAAGAAAAGTCATCAGAGATTCTAAAAAATAACGACTATGGCGGATAAGCAAGGAGGGAC
AGGAGGTGACCAAGGCCACAGTGGGGAGAGACCTAGCAGAGAGAGCACCCACCTCAATCAGGCC
ACAGCCGGGACGGAGGTTCTGAGCCACGTCTCCTGAGTTCATTTACTCGGTGGAAGTCAATCTT
AATTGTCAATTCGATGAGATTTTTAATCGCCATGGAAACAGACCTCTGAGCATGTCACGGAGAC
AGTTTCTATATCAGGTTAATCGAGGTACATCTGAGGTACAACAGTCTACCTCATAGTGGCCTCT
GACAGTCCAAAGCACGAGCGGTCATTGCCAGGGCAGCTCCATTGTCTGCCAGAGCCCTCTCTGC
TCTGCTTATAGCTGTCTCATGCCAGCCGAGTCGCTTCAGCATGCAGGTGCCTGCCTCTGCTCAC
CCCCTGTCAGTTCCCAGGTATGGCATGAAGGGTAATGCCCCGGTGTCTCTAATGACAGTCATCA
CCTACCTCACAGTTCTAGGAGCCTCGTGTCTGAGTCTGAGGTATAAGCAAGATCCTACACTTCC
ACGGCCCTAGGAGAGGATCCTTCATGCCTCTCCCAGCTACTGGTGAAGGTCACAGTTTGATCAT
CTGACTTAAGGACCCAGTGCCCTGCCATCTACCCGTTTCTTCACATGTAGGCAGCTATGCCCAA
ACAGTCTCCTTATGTAAGTGCTACTCACTCCCCCAACCTACATGCTGCCACCTGACCACTCTGG
CAGAGTCACTCTTCACAATGAGACCACATGCCATAAAGAGTCCCTTGAATAGGCTACGCAAGCC
CACACTGCCACCCAACCTCAGATCCCATGTTGACCCGTCACTCACATCCCTTCACTGGGCATGT
GCGGTTCAACTGGCCAGCTGCAGCCTCAGGGTCCCAGGTCTTCACCCTTCCCACATCCTATTCA
CCTTGGAAGTTCCTGTTGGTCCTTCAAATGGTTATTAAACTCCTCTAATG

hide sequence

Promoters

RGD ID:

15093397

Promoter ID:

EPDNEWNC_M1304

Type:

single initiation site

Name:

4833411C07Rik_1

Description:

RIKEN cDNA 4833411C07 gene [Source:MGISymbol;Acc:MGI:1918874]

SO ACC ID:

SO:0000170

Source:

EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	8	10,899,922 - 10,899,982	EPDNEWNC

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000109089	Ensembl, ENTREZGENE
Ensembl Transcript	ENSMUST00000207499	ENTREZGENE
MGD	MGI:1918874	ENTREZGENE
NCBI Gene	71624	ENTREZGENE
PhenoGen	4833411C07Rik	PhenoGen
RNAcentral	URS000075EA93	RNACentral

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Mammalian Phenotype