Etaa1os (Ewing tumor-associated antigen 1, opposite strand) - Rat Genome Database

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Gene: Etaa1os (Ewing tumor-associated antigen 1, opposite strand) Mus musculus
Analyze
Symbol: Etaa1os
Name: Ewing tumor-associated antigen 1, opposite strand
RGD ID: 1613098
MGI Page MGI
Description: INTERACTS WITH (1->4)-beta-D-glucan; bisphenol A; perfluorooctane-1-sulfonic acid
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: 2900053O20Rik; 4930542E09Rik; Etaa1 opposite strand transcript; hypothetical protein LOC72971; RIKEN cDNA 2900053O20 gene; uncharacterized protein LOC72971
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391117,903,970 - 17,909,582 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1117,903,955 - 17,928,971 (+)EnsemblGRCm39 Ensembl
GRCm381117,953,970 - 17,959,582 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1117,953,970 - 17,959,578 (+)EnsemblGRCm38mm10GRCm38
Celera1120,133,475 - 20,134,556 (+)NCBICelera
Cytogenetic Map11A3.1NCBI
cM Map1110.44NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:24200680   PMID:24316575   PMID:27899360  


Genomics

Variants

.
Variants in Etaa1os
253 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:168
Count of miRNA genes:158
Interacting mature miRNAs:165
Transcripts:ENSMUST00000140161, ENSMUST00000148496
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357722Vtbt11_mvertebral trabecular bone trait 11 (mouse)Not determined11123880487Mouse
1300768Tshp9_mtooth shape 9 (mouse)Not determined11125976374Mouse
1301765Skull15_mskull morphology 15 (mouse)Not determined11125976374Mouse
1300661Lmr6_mleishmaniasis resistance 6 (mouse)Not determined11125976374Mouse
10044008Hbnr15_mHeligmosomoides bakeri nematode resistance 15 (mouse)Not determined1122705234227232Mouse
1300599Cocrb11_mcocaine related behavior 11 (mouse)Not determined11267035536671472Mouse
27095914Pglq16_mpelvic girdle length QTL 16, 16 week (mouse)11325000018150000Mouse
27095919Pglq10_mpelvic girdle length QTL 10, 10 week (mouse)11325000018450000Mouse
27095925Pglq5_mpelvic girdle length QTL 5, 5 week (mouse)11325000019750000Mouse
27095904Scvln12_msacral vertebrae length 2, 10 week (mouse)11325000034495048Mouse
27095909Scvln6_msacral vertebrae length 2, 5 week (mouse)11325000044090827Mouse
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
10053676Eae44a_mexperimental allergic encephalomyelitis susceptibility 44a (mouse)Not determined11450789621379532Mouse
27226741Metcl5_mmetatarsal-calcaneal length 5, 5 week (mouse)11465000046290827Mouse
27226735Metcl16_mmetatarsal-calcaneal length 16, 16 week (mouse)11525000035090827Mouse
1357518Tgyl1_mtriglyceride level 1 (mouse)Not determined11688027733916219Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
1300990Bits3_mbitterness sensitivity 3 (mouse)Not determined11837212142372260Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11885000061390826Mouse
1302171Pgia28_mproteoglycan induced arthritis 28 (mouse)Not determined11890609742906218Mouse
4141047Nilac1_mnicotine induced locomotor activity 1 (mouse)Not determined11901178043011942Mouse
13524844Ppiq9_mprepulse inhibition QTL 9 (mouse)11904999735077325Mouse
13463472Mcvq15_mmean corpuscular volume QTL 15 (mouse)111095123244951464Mouse
13463479Mchq19_mmean corpuscular hemoglobin QTL 19 (mouse)111095123244951464Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
10412216Eae44_mexperimental allergic encephalomyelitis susceptibility 44 (mouse)Not determined111226863739950840Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111705617567078411Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111778196668500330Mouse


Expression


Sequence


RefSeq Acc Id: ENSMUST00000140161
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1117,903,956 - 17,909,582 (+)Ensembl
GRCm38.p6 Ensembl1117,953,970 - 17,959,578 (+)Ensembl
RefSeq Acc Id: ENSMUST00000148496
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1117,903,955 - 17,905,098 (+)Ensembl
GRCm38.p6 Ensembl1117,954,004 - 17,955,098 (+)Ensembl
RefSeq Acc Id: ENSMUST00000245969
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1117,903,974 - 17,909,582 (+)Ensembl
RefSeq Acc Id: ENSMUST00000246065
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1117,903,974 - 17,928,971 (+)Ensembl
RefSeq Acc Id: NR_131915
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391117,903,970 - 17,909,582 (+)NCBI
GRCm381117,953,970 - 17,959,582 (+)NCBI
Sequence:
RefSeq Acc Id: NR_131916
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391117,903,970 - 17,905,102 (+)NCBI
GRCm381117,953,970 - 17,955,102 (+)NCBI
Sequence:
Promoters
RGD ID:8674034
Promoter ID:EPDNEW_M15047
Type:initiation region
Name:Etaa1os_1
Description:Mus musculus Ewing tumor-associated antigen 1, opposite strand, transcript variant 1, long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381117,954,026 - 17,954,086EPDNEW
RGD ID:15093885
Promoter ID:EPDNEWNC_M1798
Type:initiation region
Name:Etaa1os_1
Description:Ewing tumor-associated antigen 1, opposite strand[Source:MGI Symbol;Acc:MGI:1920221]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381117,954,026 - 17,954,086EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000086468 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000140161 ENTREZGENE
  ENSMUST00000148496 ENTREZGENE
MGD MGI:1920221 ENTREZGENE
NCBI Gene Etaa1os ENTREZGENE
PhenoGen Etaa1os PhenoGen
RNAcentral URS00008E3A44 RNACentral
  URS00008E3A57 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-11-26 Etaa1os  Ewing tumor-associated antigen 1, opposite strand    Etaa1 opposite strand transcript  Symbol and/or name change 5135510 APPROVED
2013-11-05 Etaa1os  Etaa1 opposite strand transcript  2900053O20Rik  RIKEN cDNA 2900053O20 gene  Symbol and/or name change 5135510 APPROVED