Particl (promoter of Mat2a antisense radiation induced circulating long non-coding RNA) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Particl (promoter of Mat2a antisense radiation induced circulating long non-coding RNA) Mus musculus
Analyze
Symbol: Particl
Name: promoter of Mat2a antisense radiation induced circulating long non-coding RNA
RGD ID: 1613016
MGI Page MGI
Description: INTERACTS WITH troglitazone; cisplatin (ortholog)
Type: ncrna
RefSeq Status: VALIDATED
Also known as: 4930414L22Rik; AI449819; hypothetical protein LOC78108; uncharacterized protein LOC78108
RGD Orthologs
Human
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39672,415,666 - 72,417,598 (+)NCBIGRCm39mm39
GRCm39 Ensembl672,416,034 - 72,417,593 (+)Ensembl
GRCm38672,438,683 - 72,440,615 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl672,439,051 - 72,440,610 (+)EnsemblGRCm38mm10GRCm38
Celera674,533,733 - 74,535,665 (+)NCBICelera
Cytogenetic Map6C1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
cisplatin  (ISO)
troglitazone  (EXP)

References
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:18799693  


Genomics

Comparative Map Data
Particl
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39672,415,666 - 72,417,598 (+)NCBIGRCm39mm39
GRCm39 Ensembl672,416,034 - 72,417,593 (+)Ensembl
GRCm38672,438,683 - 72,440,615 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl672,439,051 - 72,440,610 (+)EnsemblGRCm38mm10GRCm38
Celera674,533,733 - 74,535,665 (+)NCBICelera
Cytogenetic Map6C1NCBI
PARTICL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl285,537,462 - 85,538,666 (-)EnsemblGRCh38hg38GRCh38
GRCh38285,537,467 - 85,538,886 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37285,764,590 - 85,766,009 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map2p11.2NCBI
HuRef285,661,099 - 85,662,518 (-)NCBIHuRef
CHM1_1285,694,397 - 85,695,816 (-)NCBICHM1_1

Position Markers
AI449819  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38672,440,362 - 72,440,479UniSTSGRCm38
MGSCv37672,390,356 - 72,390,473UniSTSGRCm37
Celera674,535,412 - 74,535,529UniSTS
Cytogenetic Map6C1UniSTS
Whitehead/MRC_RH6721.28UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)61117500000Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
1300556Cia6_mcollagen induced arthritis QTL 6 (mouse)Not determined6446488487426034Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396656149Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396656149Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396656149Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396656149Mouse
26884441Sklq3_mskull length QTL 3, 5 week (mouse)6760000080600000Mouse
1357442Dbts1_mdiabetes 1 (mouse)Not determined61823414873387692Mouse
13208564Bmiq7_mbody mass index QTL 7 (mouse)62500000080000000Mouse
4141782Mrdq5_mmodifier of retinal degeneration QTL 5 (mouse)Not determined3285065078238974Mouse
1558984Cplaq9_mcircadian period of locomotor activity 9 (mouse)Not determined63866962592607450Mouse
12880424V25Dq4_mvitamin D inactive form serum level QTL 4 (mouse)64160000075600000Mouse
1301266Lmr4_mleishmaniasis resistance 4 (mouse)Not determined64211637376116515Mouse
11040600Lmr4c_mleishmaniasis resistance 4c (mouse)64211637376116515Mouse
11040601Lmr4a_mleishmaniasis resistance 4a (mouse)64211637376116515Mouse
11533915Mts4_mmammary tumor susceptibility 4 (mouse)64211637376116515Mouse
12910785Pwgrq16_mpost-weaning growth rate QTL 16 (mouse)64382681377811523Mouse
12910798Pwgrq5_mpre-weaning growth rate QTL 5 (mouse)64382681377811523Mouse
12910802Pwbwq12_mpost-weaning body weight QTL 12 (mouse)64382681377811523Mouse
12910807Pwbwq11_mpost-weaning body weight QTL 11 (mouse)64382681377811523Mouse
12910809Pwbwq10_mpost-weaning body weight QTL 10 (mouse)64382681377811523Mouse
12910820Ogrq3_moverall growth rate QTL 3 (mouse)64382681377811523Mouse
1300618Pgia19_mproteoglycan induced arthritis 19 (mouse)Not determined64531405987426034Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645314059128835032Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46935985136423692Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648720000125360000Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648720000148450000Mouse
4140983Srilp_msleep response to influenza, light phase (mouse)Not determined4872655675447710Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648726556125356785Mouse
1301254Skts11_mskin tumor susceptibility 11 (mouse)Not determined65117915085179300Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652161713116155267Mouse
4141028Mclr_mmethylcholanthrene lymphoma resistance (mouse)Not determined5437342788379171Mouse
15039373Adip28_madiposity 28 (mouse)65630821190308211Mouse
15039375Bw41_mbody weight QTL 41 (mouse)65630821190308211Mouse
1558977Skmw10_mskeletal muscle weight 10 (mouse)Not determined65844758392447710Mouse
10043972Obq28_mobesity QTL 28 (mouse)Not determined65854043392540433Mouse
1301740Bwq2_mbody weight QTL 2 (mouse)Not determined66005768094057799Mouse
1301369Im4_mimmunoregulatory 4 (mouse)Not determined66348473897484905Mouse
1300650Bw18_mbody weight QTL 18 (mouse)Not determined666713869100714031Mouse
1301876Bits2_mbitterness sensitivity 2 (mouse)Not determined670425898104426034Mouse
1301813Skl3_mskeletal size (tail length) 3 (mouse)Not determined670425898104426034Mouse
1301034Egrm2_mearly growth rate (mouse)Not determined670425898104426034Mouse
4141990Etax6_methanol induced ataxia 6 (mouse)Not determined7132262186275719Mouse
1302020Bbaa20_mB.burgdorferi-associated arthritis 20 (mouse)Not determined67132262193464093Mouse
1300869Stheal5_msoft tissue heal 5 (mouse)Not determined671575060105575178Mouse
1300954Fcsa1_mfemoral cross-sectional area 1 (mouse)Not determined671981024105981170Mouse
1301521Pas1c_mpulmonary adenoma susceptibility 1c (mouse)Not determined671981024105981170Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000205370
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl672,439,051 - 72,440,610 (+)Ensembl
RefSeq Acc Id: NR_046011
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39672,415,666 - 72,417,598 (+)NCBI
GRCm38672,438,683 - 72,440,615 (+)ENTREZGENE
Celera674,533,733 - 74,535,665 (+)ENTREZGENE
cM Map6 ENTREZGENE
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000108591 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000205370 ENTREZGENE
MGD MGI:1925358 ENTREZGENE
NCBI Gene 78108 ENTREZGENE
PhenoGen Particl PhenoGen
RNAcentral URS000075AA99 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-05-19 Particl  promoter of Mat2a antisense radiation induced circulating long non-coding RNA  4930414L22Rik  RIKEN cDNA 4930414L22 gene  Symbol and/or name change 5135510 APPROVED