1700124L16Rik (RIKEN cDNA 1700124L16 gene) - Rat Genome Database
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Gene: 1700124L16Rik (RIKEN cDNA 1700124L16 gene) Mus musculus
Analyze
Symbol: 1700124L16Rik
Name: RIKEN cDNA 1700124L16 gene
RGD ID: 1612328
MGI Page MGI
Description:
Type: ncrna
RefSeq Status: PREDICTED
Also known as: hypothetical protein LOC67934
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39683,738,741 - 83,739,490 (-)NCBIGRCm39mm39
GRCm39 Ensembl683,738,738 - 83,739,847 (-)Ensembl
GRCm38683,761,759 - 83,762,508 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl683,761,756 - 83,762,865 (-)EnsemblGRCm38mm10GRCm38
MGSCv37683,711,750 - 83,712,502 (-)NCBIGRCm37mm9NCBIm37
MGSCv36683,711,750 - 83,712,634 (-)NCBImm8
Celera685,720,589 - 85,745,682 (-)NCBICelera
Cytogenetic Map6C3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:24316575  


Genomics

Position Markers
AW208839  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38683,751,084 - 83,751,196UniSTSGRCm38
MGSCv37683,701,078 - 83,701,190UniSTSGRCm37
Celera685,733,718 - 85,733,830UniSTS
Cytogenetic Map6C3UniSTS
cM Map632.9UniSTS
Whitehead/MRC_RH6855.51UniSTS
Y17792  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38683,738,044 - 83,738,191UniSTSGRCm38
MGSCv37683,688,038 - 83,688,185UniSTSGRCm37
Celera685,720,672 - 85,720,819UniSTS
Cytogenetic Map6C3UniSTS
cM Map635.5UniSTS
Whitehead/MRC_RH6855.51UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)61117500000Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
1300556Cia6_mcollagen induced arthritis QTL 6 (mouse)Not determined6446488487426034Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396656149Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396656149Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396656149Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396656149Mouse
1558984Cplaq9_mcircadian period of locomotor activity 9 (mouse)Not determined63866962592607450Mouse
1300618Pgia19_mproteoglycan induced arthritis 19 (mouse)Not determined64531405987426034Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645314059128835032Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46935985136423692Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648720000125360000Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648720000148450000Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648726556125356785Mouse
1301254Skts11_mskin tumor susceptibility 11 (mouse)Not determined65117915085179300Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652161713116155267Mouse
4141028Mclr_mmethylcholanthrene lymphoma resistance (mouse)Not determined5437342788379171Mouse
15039373Adip28_madiposity 28 (mouse)65630821190308211Mouse
15039375Bw41_mbody weight QTL 41 (mouse)65630821190308211Mouse
1558977Skmw10_mskeletal muscle weight 10 (mouse)Not determined65844758392447710Mouse
10043972Obq28_mobesity QTL 28 (mouse)Not determined65854043392540433Mouse
1301740Bwq2_mbody weight QTL 2 (mouse)Not determined66005768094057799Mouse
1301369Im4_mimmunoregulatory 4 (mouse)Not determined66348473897484905Mouse
1300650Bw18_mbody weight QTL 18 (mouse)Not determined666713869100714031Mouse
1301876Bits2_mbitterness sensitivity 2 (mouse)Not determined670425898104426034Mouse
1301813Skl3_mskeletal size (tail length) 3 (mouse)Not determined670425898104426034Mouse
1301034Egrm2_mearly growth rate (mouse)Not determined670425898104426034Mouse
4141990Etax6_methanol induced ataxia 6 (mouse)Not determined7132262186275719Mouse
1302020Bbaa20_mB.burgdorferi-associated arthritis 20 (mouse)Not determined67132262193464093Mouse
1300869Stheal5_msoft tissue heal 5 (mouse)Not determined671575060105575178Mouse
1300954Fcsa1_mfemoral cross-sectional area 1 (mouse)Not determined671981024105981170Mouse
1301521Pas1c_mpulmonary adenoma susceptibility 1c (mouse)Not determined671981024105981170Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673500000134700000Mouse
1301320Ots1_movarian teratoma susceptibility 1 (mouse)Not determined675447583104503555Mouse
1301571Arrd1_mage-related retinal degeneration 1 (mouse)Not determined67554435692607450Mouse
1300674Nidd3n_mnon-insulin-dependent diabetes mellitus 3 in NSY (mouse)Not determined67554435694225955Mouse
10412195Efw_mepididymal fat weight (mouse)Not determined67554435694225955Mouse
10043901Pfat5_mpredicted fat percentage 5 (mouse)Not determined675607306109607450Mouse
10412208Cypr4_mcytokine production 4 (mouse)Not determined675716503109716697Mouse
1357875Pfat2_mpredicted fat percentage 2 (mouse)Not determined676463949110464093Mouse
14697704Stsl4_mSalmonella typhimurium susceptibility locus 4 (mouse)67710000090000000Mouse
13824985Alh1_mamplitude of lateral head displacement 1 (mouse)67800000097000000Mouse
4141376Dbm1_mdiabetes modifier 1 (mouse)Not determined678629504121115387Mouse
14696731Pairq1_mP. aeruginosa infection resistance QTL 1 (mouse)681500000102200000Mouse
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683713869147052561Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000189129
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl683,761,756 - 83,762,508 (-)Ensembl
RefSeq Acc Id: ENSMUST00000189308
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl683,761,756 - 83,762,842 (-)Ensembl
RefSeq Acc Id: ENSMUST00000190077
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl683,761,756 - 83,762,865 (-)Ensembl
RefSeq Acc Id: NR_105027
RefSeq Status: PREDICTED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39683,738,741 - 83,739,490 (-)NCBI
GRCm38683,761,759 - 83,762,508 (-)NCBI
Celera685,744,933 - 85,745,682 (-)NCBI
Sequence:
Promoters
RGD ID:6838709
Promoter ID:MM_KWN:46628
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   Kidney
Transcripts:AK005768_1700124L16RIK,   ENSMUST00000014891,   ENSMUST00000113857
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36683,711,731 - 83,713,127 (-)MPROMDB
RGD ID:6890186
Promoter ID:EPDNEW_M8544
Type:initiation region
Name:1700124L16Rik_1
Description:Mus musculus RIKEN cDNA 1700124L16 gene , long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38683,762,493 - 83,762,553EPDNEW
RGD ID:15093097
Promoter ID:EPDNEWNC_M1009
Type:multiple initiation site
Name:1700124L16Rik_2
Description:RIKEN cDNA 1700124L16 gene [Source:MGISymbol;Acc:MGI:1915184]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38683,762,493 - 83,762,553EPDNEWNC
RGD ID:15093094
Promoter ID:EPDNEWNC_M1010
Type:initiation region
Name:1700124L16Rik_1
Description:RIKEN cDNA 1700124L16 gene [Source:MGISymbol;Acc:MGI:1915184]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38683,762,863 - 83,762,923EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000099354 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000189129 ENTREZGENE
MGD MGI:1915184 ENTREZGENE
NCBI Gene 67934 ENTREZGENE
PhenoGen 1700124L16Rik PhenoGen
RNAcentral URS000075BF1C RNACentral