2010110K18Rik (RIKEN cDNA 2010110K18 gene) - Rat Genome Database

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Gene: 2010110K18Rik (RIKEN cDNA 2010110K18 gene) Mus musculus
Analyze
Symbol: 2010110K18Rik
Name: RIKEN cDNA 2010110K18 gene
RGD ID: 1612228
MGI Page MGI
Description: Is expressed in several structures, including heart; intestine; liver; lung; and spleen.
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: MODEL
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391834,886,496 - 34,891,747 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1834,884,796 - 34,891,747 (+)EnsemblGRCm39 Ensembl
GRCm381834,753,443 - 34,758,694 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1834,751,809 - 34,758,685 (+)EnsemblGRCm38mm10GRCm38
MGSCv371834,911,566 - 34,918,339 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1835,206,034 - 35,212,799 (+)NCBICelera
Cytogenetic Map18B1NCBI
cM Map1818.71NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:14610273   PMID:16141072   PMID:16141073   PMID:18799693   PMID:24200680   PMID:27899360   PMID:34861058  


Genomics

Variants

.
Variants in 2010110K18Rik
138 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:215
Count of miRNA genes:201
Interacting mature miRNAs:206
Transcripts:ENSMUST00000181453, ENSMUST00000181641
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226723Tibw9_mtibia width 9, proximal, 16 week (mouse)18320000060933072Mouse
1558849W3q15_mweight 3 weeks QTL 15 (mouse)Not determined18504111961272643Mouse
1558873Hrtfm7_mheart failure modifier 7 (mouse)Not determined18808696442087106Mouse
13504732Cath6_mcarotid atherosclerosis 6 (mouse)181363712647637126Mouse
1357603Mom3_mmodifier of Min 3 (mouse)Not determined181403002367098962Mouse
1300994Pvcan3_mprotection against vaginal candidiasis 3 (mouse)Not determined181619964050199776Mouse
1301307Phospq1_mphospholipid QTL 1 (mouse)Not determined181813970452139859Mouse
1300638Im7_mimmunoregulatory 7 (mouse)Not determined181901887453018992Mouse
1558743Kcal1_mkilocalorie 1 (mouse)Not determined181901887453018992Mouse
11532709Sluc41_msusceptibility to lung cancer 41 (mouse)182095369457590708Mouse
13463476Hctq8_mhematocrit QTL 8 (mouse)182121758055217727Mouse
1301950Otx2m1_morthodenticle homolog 2 (Drosophila) modifier 1 (mouse)Not determined182156868236187740Mouse
1300877Adip8_madiposity 8 (mouse)Not determined182261991456620127Mouse
11532710Sluc41a_msusceptibility to lung cancer 41a (mouse)182261991456620127Mouse
11532715Sluc41b_msusceptibility to lung cancer 41b (mouse)182261991456620127Mouse
11532716Sluc41c_msusceptibility to lung cancer 41c (mouse)182261991456620127Mouse
1301570Sluc14_msusceptibility to lung cancer 14 (mouse)Not determined182261991456620127Mouse
4142031Moen1_mmodifier of engrailed QTL 1 (mouse)Not determined182411556058115730Mouse
25823173Hrsq12_mhost response to SARS QTL 12, hemorrhage (mouse)182489588178339555Mouse
12904950Smmq3_msoleus muscle mass QTL 3 (mouse)182605687560056875Mouse
25823167Hrsq5_mhost response to SARS QTL 5, D3% weight (mouse)182724111558827077Mouse
25823171Hrsq10_mhost response to SARS QTL 10, D4% weight (mouse)182724111558827077Mouse
25823174Hrsq11_mhost response to SARS QTL 11, log titer (mouse)182724111558827077Mouse
1301400Lmr13_mleishmaniasis resistance 13 (mouse)Not determined182810938062109518Mouse
4141857Mhysq5_mmale hybrid sterility QTL 5 (mouse)Not determined2813060462130739Mouse
1302163Bmd16_mbone mineral density 16 (mouse)Not determined182966791463668060Mouse
12880412V125Dq12_mvitamin D active form serum level QTL 12 (mouse)183023306764233067Mouse
1300685Scc5_mcolon tumor susceptibility 5 (mouse)Not determined183198848065988629Mouse
1357690Vtbt19_mvertebral trabecular bone trait 19 (mouse)Not determined183309104367091221Mouse


Expression


Sequence


RefSeq Acc Id: ENSMUST00000181453
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1834,884,862 - 34,889,713 (+)Ensembl
GRCm38.p6 Ensembl1834,751,809 - 34,756,660 (+)Ensembl
RefSeq Acc Id: ENSMUST00000181641
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1834,884,796 - 34,891,738 (+)Ensembl
GRCm38.p6 Ensembl1834,751,912 - 34,758,685 (+)Ensembl
RefSeq Acc Id: ENSMUST00000236940
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1834,884,801 - 34,891,747 (+)Ensembl
GRCm38.p6 Ensembl1834,756,001 - 34,758,467 (+)Ensembl
RefSeq Acc Id: ENSMUST00000240887
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1834,884,821 - 34,891,740 (+)Ensembl
RefSeq Acc Id: ENSMUST00000241087
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1834,884,829 - 34,891,742 (+)Ensembl
RefSeq Acc Id: ENSMUST00000241411
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1834,884,799 - 34,891,745 (+)Ensembl
RefSeq Acc Id: ENSMUST00000241629
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1834,884,829 - 34,891,718 (+)Ensembl
RefSeq Acc Id: ENSMUST00000242061
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1834,884,832 - 34,891,718 (+)Ensembl
RefSeq Acc Id: ENSMUST00000242303
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1834,884,829 - 34,891,722 (+)Ensembl
RefSeq Acc Id: ENSMUST00000242802
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1834,884,862 - 34,891,702 (+)Ensembl
RefSeq Acc Id: XR_001782407
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391834,886,496 - 34,891,747 (+)NCBI
GRCm381834,753,443 - 34,758,694 (+)NCBI
Sequence:
Promoters
RGD ID:13677386
Promoter ID:EPDNEW_M22842
Type:initiation region
Name:AK029153_1
Description:n/a
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381834,751,779 - 34,751,839EPDNEW
RGD ID:15094947
Promoter ID:EPDNEWNC_M2852
Type:initiation region
Name:2010110K18Rik_1
Description:RIKEN cDNA 2010110K18 gene [Source:MGISymbol;Acc:MGI:1922951]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381834,751,779 - 34,751,839EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000097755 Ensembl
MGD MGI:1922951 ENTREZGENE
NCBI Gene 100503082 ENTREZGENE
PhenoGen 2010110K18Rik PhenoGen