AA543401 (cDNA sequence, AA543401) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: AA543401 (cDNA sequence, AA543401) Mus musculus
Analyze
Symbol: AA543401
Name: cDNA sequence, AA543401
RGD ID: 1612013
MGI Page MGI
Description:
Type: pseudo
RefSeq Status: VALIDATED
Also known as: hypothetical protein LOC140702; Mycs-l; Mycs-like; uncharacterized protein LOC140702
Related Functional Gene: Mycs  
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399107,070,006 - 107,071,260 (+)NCBIGRCm39mm39
GRCm389107,192,807 - 107,194,061 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9107,192,793 - 107,194,061 (+)EnsemblGRCm38mm10GRCm38
MGSCv379107,095,130 - 107,096,389 (+)NCBIGRCm37mm9NCBIm37
Celera9106,804,393 - 106,805,652 (+)NCBICelera
Cytogenetic Map9F1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:11525062   PMID:14691545   PMID:16183747  


Genomics

Position Markers
AA543401  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv379107,095,634 - 107,095,853UniSTSGRCm37
MGSCv379107,095,658 - 107,095,940UniSTSGRCm37
Celera9106,804,921 - 106,805,203UniSTS
Celera9106,804,897 - 106,805,116UniSTS
cM Map9 UniSTS
UniSTS:236252  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389107,193,279 - 107,193,613UniSTSGRCm38
MGSCv379107,095,610 - 107,095,944UniSTSGRCm37
Celera9106,804,873 - 106,805,207UniSTS
Cytogenetic Map9F1UniSTS
AA543401  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389107,193,303 - 107,193,522UniSTSGRCm38
MGSCv379107,095,634 - 107,095,853UniSTSGRCm37
Celera9106,804,897 - 106,805,116UniSTS
Cytogenetic Map9F1UniSTS
cM Map9 UniSTS
AA543401  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389107,193,327 - 107,193,609UniSTSGRCm38
MGSCv379107,095,658 - 107,095,940UniSTSGRCm37
Celera9106,804,921 - 106,805,203UniSTS
Cytogenetic Map9F1UniSTS
cM Map9 UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13207569Tcq13_mtotal cholesterol QTL 13 (mouse)959990000109260000Mouse
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63332429120362868Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63332429120362868Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963332429120362868Mouse
1301725Lifespan1_mlife span 1 (mouse)Not determined974368177108368325Mouse
1302065El1_mepilepsy 1 (mouse)Not determined975775364114474379Mouse
10054492El7_mepilepsy 7 (mouse)Not determined975775364114474379Mouse
1301407Rapop2_mradiation-induced apoptosis 2 (mouse)Not determined976535936110536130Mouse
1301192Skts6_mskin tumor susceptibility 6 (mouse)Not determined978640645112640755Mouse
10401247Bglu14_mblood glucose level 14 (mouse)Not determined979397810113397888Mouse
1301732Char1_mP. chabaudi malaria resistance QTL 1 (mouse)Not determined981798268115798392Mouse
1300884Sluc11_msusceptibility to lung cancer 11 (mouse)Not determined982910333116910428Mouse
1357461Idd2_minsulin dependent diabetes susceptibility 2 (mouse)Not determined982910333116910428Mouse
10766454Char10_mP. chabaudi malaria resistance QTL 10 (mouse)982910333116910428Mouse
1301487Nociq1_mnociceptive sensitivity inflammatory QTL 1 (mouse)Not determined984528818118528921Mouse
10412180Msam3_mmuscle, skeletal, activity measure 3 (mouse)Not determined985897510108641186Mouse
1300549Bbaa17_mB. burgdorferi-associated arthritis 17 (mouse)Not determined986230401120230530Mouse
1302103Dob2_mdietary obesity 2 (mouse)Not determined986239845120289624Mouse
11251716Siim2_mstress induced immobility 2 (mouse)986748483120748483Mouse
12880422V25Dq6_mvitamin D inactive form serum level QTL 6 (mouse)987800000121800000Mouse
10412242Alpq8_malcohol preference QTL 8 (mouse)Not determined989284925123284925Mouse
1301649Psl1_mpromotion susceptibility QTL 1 (mouse)Not determined989412277123412396Mouse
18182932Metl3_mmetabolite locus 3, N-acetylglutamate (mouse)989563342123563342Mouse
1357657Pymr_mPlasmodium yoelli malaria resistance (mouse)Not determined989977005118938021Mouse
12910770Splic1_mspleen iron content 1 (mouse)991413879124595110Mouse
12910772Lvic6_mliver iron content 6 (mouse)991413879124595110Mouse
12910773Splic3_mspleen iron content 3 (mouse)991413879124595110Mouse
1558767Skmw11_mskeletal muscle weight 11 (mouse)Not determined991641084124595110Mouse
13463474Hbbcq5_mhemoglobin concentration QTL 5 (mouse)991641084124595110Mouse
13463475Hctq7_mhematocrit QTL 7 (mouse)991641084124595110Mouse
13463477Rbc9_mred blood cell count 9 (mouse)991641084124595110Mouse
13463478Mchq18_mmean corpuscular hemoglobin QTL 18 (mouse)991641084124595110Mouse
13463480Mchcq2_mmean corpuscular hemoglobin concentration QTL 2 (mouse)991641084124595110Mouse
12904937Edlmmq9_mextensor digitorum longus muscle mass QTL 9 (mouse)991683173124595110Mouse
12904947Tammq7_mtibialis anterior muscle mass QTL 7 (mouse)991683173124595110Mouse
12904961Gmmq7_mgastrocnemius muscle mass QTL 7 (mouse)991683173124595110Mouse
1302001Bdln5_mbody length 5 (mouse)Not determined993762590124595110Mouse
1301484Bwq6_mbody weight (mouse)Not determined993762590124595110Mouse
14746992Manh67_mmandible shape 67 (mouse)994036768124595110Mouse
11081166Psl5_mpromotion susceptibility QTL 5 (mouse)994981301112872929Mouse
11537364Cnes5_mC. neoformans susceptibility locus 5 (mouse)996917590124595110Mouse
1301297Lcho1_mliver cholesterol 1 (mouse)Not determined9101060861124595110Mouse
1357627Tgq2_mtriglyceride QTL 2 (mouse)Not determined9102000187124595110Mouse
1357648Obq18_mobesity QTL 18 (mouse)Not determined9102000187124595110Mouse
1301789Pbwg4_mpostnatal body weight growth 4 (mouse)Not determined9103289445124595110Mouse
10412290Pvacm1l_mplasma vascular cell adhesion molecule 1 levels (mouse)Not determined9103289445124595110Mouse
12879896Berr3_mberghei resistance locus 3 (mouse)9103289445124595110Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:82
Count of miRNA genes:80
Interacting mature miRNAs:82
Transcripts:ENSMUST00000164248
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000164248
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9107,192,793 - 107,194,061 (+)Ensembl
RefSeq Acc Id: NR_102273
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,070,006 - 107,071,260 (+)NCBI
GRCm389107,192,807 - 107,194,061 (+)NCBI
Celera9106,804,401 - 106,805,655 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000092125 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000164248 ENTREZGENE
MGD MGI:2155152 ENTREZGENE
NCBI Gene AA543401 ENTREZGENE
PhenoGen AA543401 PhenoGen