A830082K12Rik (RIKEN cDNA A830082K12 gene)

Gene: A830082K12Rik (RIKEN cDNA A830082K12 gene) Mus musculus

Analyze

Symbol:

A830082K12Rik

Name:

RIKEN cDNA A830082K12 gene

RGD ID:

1611971

MGI Page

MGI

Description:

Acts upstream of or within neuron differentiation. Is expressed in genitourinary system and intestine.

Type:

ncrna (Ensembl: lncRNA)

RefSeq Status:

PREDICTED

Previously known as:

hypothetical protein LOC320174

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	78,346,136 - 78,384,683 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	78,346,136 - 78,427,510 (+)	Ensembl		GRCm39 Ensembl
GRCm38	13	78,198,017 - 78,236,564 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	78,198,017 - 78,279,391 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	13	78,341,245 - 78,375,825 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
Celera	13	80,517,632 - 80,522,988 (+)	NCBI		Celera
Cytogenetic Map	13	C1	NCBI
cM Map	13	41.38	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

neuron differentiation (IMP)

Cellular Component

cellular_component (ND)

Molecular Function

molecular_function (ND)

References

Additional References at PubMed

PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:16141072	PMID:16141073	PMID:24316575	PMID:27585883	PMID:32969152

Genomics

Variants

Variants in A830082K12Rik
1048 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	573
Count of miRNA genes:	410
Interacting mature miRNAs:	465
Transcripts:	ENSMUST00000123998, ENSMUST00000131564, ENSMUST00000134705, ENSMUST00000144545, ENSMUST00000145613, ENSMUST00000183171
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4142147	Mvwf4_m	modifier of von Willebrand factor 4 (mouse)			Not determined			20477612	112898424	Mouse
10412235	Scgq5_m	spontaneous crescentic glomerulonephritis QTL 5 (mouse)			Not determined		13	36060908	96239162	Mouse
4142331	Bxs6_m	BXSB/MpJ autoimmune nephritis 6 (mouse)			Not determined			45210442	83744746	Mouse
10412109	Bxs7_m	BXSB/MpJ autoimmune nephritis 7 (mouse)			Not determined		13	45210442	83744746	Mouse
4142372	Moo2_m	modifier of Odc2 (mouse)			Not determined		X	50318411	84318559	Mouse
1301666	Eae13_m	susceptibility to experimental allergic encephalomyelitis 13 (mouse)			Not determined		13	50318411	84318559	Mouse
1300573	Elsgp2_m	elevated serum gp70 2 (mouse)			Not determined		13	50616828	84617027	Mouse
14746975	Manh74_m	mandible shape 74 (mouse)					13	52477269	86477269	Mouse
1302073	Pgct1_m	primordial germ cell tumor locus 1 (mouse)			Not determined		13	53820783	87820897	Mouse
1357563	Bmch6_m	bone mechanical trait 6 (mouse)			Not determined		13	55384980	89385140	Mouse
4142314	Tailaq3_m	tail length adjusted QTL 3 (mouse)			Not determined			55720354	112431103	Mouse
4140959	W10q17_m	weight 10 weeks QTL 17 (mouse)			Not determined			55720354	112431103	Mouse
4141992	W6q16_m	weight 6 weeks QTL 16 (mouse)			Not determined			55720354	112431103	Mouse
4142241	Tailq3_m	tail length QTL 3 (mouse)			Not determined			55720354	112431103	Mouse
10402414	Sgp5_m	serum gp70 production 5 (mouse)			Not determined		13	56470456	105422186	Mouse
1357553	Cia28_m	collagen induced arthritis 28 (mouse)			Not determined		13	56629249	96239162	Mouse
10412163	Wra1_m	wheel running activity 1 (mouse)			Not determined		13	59132600	93132738	Mouse
1300941	Skl6_m	skeletal size (tail length) 6 (mouse)			Not determined		13	64250821	98250945	Mouse
1301949	Skull20_m	skull morphology 20 (mouse)			Not determined		13	64250821	98250945	Mouse
1301445	Listr2_m	listeriosis resistance 2 (mouse)			Not determined		13	66744601	100744746	Mouse
1301593	Heal8_m	wound healing/regeneration 8 (mouse)			Not determined		13	68053999	102054119	Mouse
14696726	Kidrq3_m	kidney weight, right QTL 3 (mouse)					13	68217066	102217066	Mouse
14747007	Mancz11_m	mandible centroid size 11 (mouse)					13	70111284	104111284	Mouse
4141266	Mol3_m	modifier of LPS-response 3 (mouse)			Not determined			76132600	112431103	Mouse
1301610	Dps1_m	delta power in slow-wave sleep 1 (mouse)			Not determined		13	77195862	95730894	Mouse
12880414	V125Dq10_m	vitamin D active form serum level QTL 10 (mouse)					13	78036508	112036508	Mouse
12880402	Emlq1_m	emotional learning QTL 1 (mouse)					13	78108858	96866553	Mouse
12879495	Fexq1_m	fear expression QTL 1 (mouse)					13	78268858	95836553	Mouse

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NR_045195	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AK044036	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK082108	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CT025642	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSMUST00000123998

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	13	78,350,457 - 78,384,683 (+)	Ensembl
GRCm38.p6 Ensembl	13	78,202,374 - 78,236,564 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000131564

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	13	78,350,085 - 78,383,856 (+)	Ensembl
GRCm38.p6 Ensembl	13	78,201,984 - 78,234,713 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000134705

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	13	78,350,672 - 78,383,779 (+)	Ensembl
GRCm38.p6 Ensembl	13	78,202,553 - 78,231,386 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000137199

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	13	78,347,857 - 78,348,634 (+)	Ensembl
GRCm38.p6 Ensembl	13	78,199,738 - 78,200,515 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000144545

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	13	78,347,897 - 78,380,096 (+)	Ensembl
GRCm38.p6 Ensembl	13	78,199,778 - 78,231,977 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000145613

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	13	78,346,136 - 78,383,852 (+)	Ensembl
GRCm38.p6 Ensembl	13	78,198,017 - 78,235,733 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000183171

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	13	78,350,906 - 78,427,510 (+)	Ensembl
GRCm38.p6 Ensembl	13	78,202,787 - 78,279,391 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000241212

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	13	78,350,150 - 78,383,792 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000241730

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	13	78,350,157 - 78,383,772 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000241985

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	13	78,350,129 - 78,383,772 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000243895

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	13	78,350,101 - 78,350,451 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000244452

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	13	78,350,493 - 78,379,767 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000246705

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	13	78,350,101 - 78,380,276 (+)	Ensembl

RefSeq Acc Id:

NR_045195

RefSeq Status:

PREDICTED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	13	78,346,136 - 78,384,683 (+)	NCBI
GRCm38	13	78,198,017 - 78,236,564 (+)	ENTREZGENE
Celera	13	80,484,587 - 80,522,988 (+)	ENTREZGENE
cM Map	13		ENTREZGENE

Sequence:

show sequence

ACAGAAGCCCCATCCCCACAGCCACAGGCACCAAGGCGAGAGAGAAAGAAAGAGCAGGGAGGCG
GGCGAAGCGCAGGGAGAGAAGCAGAGAAGAAATATTCACCTTCCCGCCTCATGCCCACTTTGAG
GCACTTCTTGAGGCGGCAGTATTGGCACTGGTTGCGGTGGTGCTGGTCGATGGGACAGTTCCTG
TTGGCACGGCATGTGTGGCCATGGAATGGTGTAGCAGATTGCTGCAGATGGTTTCAATAGTTCT
GCTGAATGCTCCTTGTTTGTGCCTGCAAGAGGAACTCAAGGCTTTATGTATGGCCATTGCTGTG
ACCTAGTGTGATGCTCTACTTTTCCACTGAACTCTGCTTGCTCTAACTGAGGACCTTAGCTATA
ATTTAGCCTTTTCTTTTTATATTAAGCTGTTGTTGAGGAAGGAGCTTTGGCAATAGAAGAAACC
AAGCAGCAGGTTAATTTCCACTGTTGACACAACTGGAAACGGATCCCTACTTTATGCATTGGAG
ATGCTATGAAGACTACTCTGTCTGATGTTTCCCTATTGGGATAGTGAAGTATGATGCTTCATTG
GTTGAGTGTATGCAATCAAAGTAAGAGTGAAAAAGGAAGATCTGAGGAGTGGGCAGATGCCTGC
CGGGTAAACTATTTGTGGCATAAACTTGAGGACCCCACAGGAAAGCCAGATGTTGTCATGTGCT
TCAAACCACAATTCTGCTATTGAATGGGGGATTACTGGTCAGTGACTAGCCAAAATGGTGAGCT
TCATGTGCTGAGAGAACTACCTATCTCAAAAAAATAAGGTGAAAGGGCTAGAGAGGTGGCAAAG
TAGCACTGACTGATCTCTCAGAGGAGAACGTGGATTCAACTCCTAGCACCCACATAGCAGCCAA
CAACCATCTGTAACTCCAGTCTCAGGGGATTTAGTGCCTTCTTATATCCTCAGTGAACACTGCA
CATATATTGTGCATAGACATACATTCAGTCAAACAAACACTCAGACACATAAAAATAAATGAAA
TCTCAAAATATTTTAAAAAGATAATGTGGAGGGTGATTGAGGCCTTATATTAATCTTTAGACTT
TACAAAATGAGTTTTACACACACACACACACACAGAAAACACACAAACACACTATATGTACACA
CACATATATACACTGACACACACACTTGAAAAATTGTTATTGCTTAAAATTTTTTTGATAACTT
GTCTCAGAATTTTTATTATTGATTTTATTATAATATTAATTTTTAGTCTACAGTAAATCTTTAT
GCTGGAACTAGACTTCAGGATTATTATAAGATATATTTAATGTATAAATTTGAGTTCATAATTG
TGAGAATAATTCTTTTATGGTTGTGGTAATAAAGTATCATTATCTTCTTAGATCTAATGTAAGA
TTCAAACTCTGACCCACTAACTTCCAAGTCCCTTCTTAAAAGTGCTGTATTAAACTGCATGAAG
CTTTTTTTCCCTTTTTTCTTTTTCAAGTCAGGGTTATTTTGTGTAGTCCTAATTGTCCCGGAAC
AATGGTTGCCTGTGAGCCCCAGCATCTGTAATAGTCAGGATCTGGCAGAGCCTCTCAGGAGACA
CTGTATCAGGCTCCTGTCAGCAAGCACTTCTTGGCATCAGAAATAGTGTCTCGGTTTGGTGTTT
GCATATGGGATGGATCCCCAGGTGAGGCAGCCTCTGGAAGGTCTTTTCTTTCAGTCTCTGCTCC
ACTTTTTGTCCCTGTATTTCCCTCAGAAAGGAGCAATTCTGGGTTAAAATTTTTGAGATGGGTG
GGTGGTCCCATCCCTCAAGTGGGATGCCATGCCTAACCTCGAGATATGGTCTCAACAGGTTTTC
ATTCCCCTTTGTGGGGCATTTCAGCTAATGTCATCCCCATGGGGTCCTGGGAGGCTCTTGCTTT
CCTGGCATTTGGGACTTTCTGGTTGCTACCCCCAGTTCTGTGAGGAGAGGGTGTGGCAGTAGTC
CCAATATGGCGCCTGGGACTGTGACTAAGTCTTATGACTTGCACCTGACTTCCTCATACACCTG
AAAATAAGCCATGACCATCGTGAGAACTGTGCAGGTGCACCATGATGCTGGCGGTGTAAACAAG
TCCATATTTGGTGGAGATGTGCCCCTGCCGCCCTAATTGGCTGAAGCCACGTGCCTGGTGAGGT
GACATGGCCTGCCGTGAGTGGATGGGGGCTGAGAGTATATAAGAGTGAGAGGCCTGGGGTTCAG
GGGGGAAGAGATGAAGAGGGAGAGAGATGAAGACTGAAGATTGCTGAATAAACTACTGTTAGAA
G

hide sequence

Promoters

RGD ID:

8680886

Promoter ID:

EPDNEW_M18474

Type:

single initiation site

Name:

A830082K12Rik_1

Description:

Mus musculus RIKEN cDNA A830082K12 gene , long non-coding RNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	13	78,198,017 - 78,198,077	EPDNEW

RGD ID:

15094338

Promoter ID:

EPDNEWNC_M2238

Type:

single initiation site

Name:

A830082K12Rik_1

Description:

RIKEN cDNA A830082K12 gene [Source:MGISymbol;Acc:MGI:2443527]

SO ACC ID:

SO:0000170

Source:

EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	13	78,198,017 - 78,198,077	EPDNEWNC

RGD ID:

15094323

Promoter ID:

EPDNEWNC_M2239

Type:

multiple initiation site

Name:

A830082K12Rik_2

Description:

RIKEN cDNA A830082K12 gene [Source:MGISymbol;Acc:MGI:2443527]

SO ACC ID:

SO:0000170

Source:

EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	13	78,201,982 - 78,202,042	EPDNEWNC

RGD ID:

15094322

Promoter ID:

EPDNEWNC_M2240

Type:

multiple initiation site

Name:

A830082K12Rik_4

Description:

RIKEN cDNA A830082K12 gene [Source:MGISymbol;Acc:MGI:2443527]

SO ACC ID:

SO:0000170

Source:

EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	13	78,202,383 - 78,202,443	EPDNEWNC

RGD ID:

15094339

Promoter ID:

EPDNEWNC_M2241

Type:

initiation region

Name:

A830082K12Rik_3

Description:

RIKEN cDNA A830082K12 gene [Source:MGISymbol;Acc:MGI:2443527]

SO ACC ID:

SO:0000170

Source:

EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	13	78,202,761 - 78,202,821	EPDNEWNC

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000087143	Ensembl
MGD	MGI:2443527	ENTREZGENE
NCBI Gene	320174	ENTREZGENE
PhenoGen	A830082K12Rik	PhenoGen
RNAcentral	URS0000759E6E	RNACentral

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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