Carlr (cardiac and apoptosis-related long non-coding RNA) - Rat Genome Database

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Gene: Carlr (cardiac and apoptosis-related long non-coding RNA) Mus musculus
Analyze
Symbol: Carlr
Name: cardiac and apoptosis-related long non-coding RNA
RGD ID: 1611924
MGI Page MGI
Description: Enables pre-miRNA binding activity. Acts upstream of or within several processes, including cellular response to anoxia; negative regulation of mitochondrial fission; and regulation of miRNA-mediated gene silencing. Located in cytoplasm.
Type: ncrna (Ensembl: protein-coding)
RefSeq Status: VALIDATED
Previously known as: 4933439G12Rik; C; Carl; hypothetical protein LOC66774; uncharacterized protein LOC66774
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39218,804,056 - 18,806,629 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl218,804,056 - 18,806,629 (-)EnsemblGRCm39 Ensembl
GRCm38218,799,245 - 18,801,818 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl218,799,245 - 18,801,818 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map2A3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IDA)

Molecular Function

References
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:24316575   PMID:24710105  


Genomics

Variants

.
Variants in Carlr
73 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:52
Count of miRNA genes:52
Interacting mature miRNAs:52
Transcripts:ENSMUST00000181515
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10045633Heal15_mwound healing/regeneration 15 (mouse)Not determined2121989642Mouse
4141836Tgq11_mtriglyceride QTL 11 (mouse)Not determined125324559Mouse
4142333Tgq10_mtriglyceride QTL 10 (mouse)Not determined125324559Mouse
1301838Sluc16_msusceptibility to lung cancer 16 (mouse)Not determined2126529589Mouse
12904743Carcdq3_mcardiac collagen deposition QTL 3 (mouse)2323494028179150Mouse
1301769Orgwq2_morgan weight QTL 2 (mouse)Not determined2388712693421651Mouse
1301980Fcsa5_mfemoral cross-sectional area 5 (mouse)Not determined2767911541679261Mouse
1301790Pcfm1_mperiosteal circumference and femur length 1 (mouse)Not determined2823629642236396Mouse
10043876Adip22_madiposity 22 (mouse)Not determined2830805142308240Mouse
1300624Insq7_minsulin QTL 7 (mouse)Not determined2938444643384575Mouse
10755513Amzn4_manatomical modifier of Zfp423 4 (mouse)2938444643384575Mouse
12903993Opfaq1_mopen field activity QTL 1 (mouse)2967669127022642Mouse
8552707Cia23_mcollagen induced arthritis QTL 23 (mouse)Not determined21212953766556453Mouse
1301641Sbmd2_mspinal bone mineral density 2 (mouse)Not determined21421456748214713Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000181515   ⟹   ENSMUSP00000159257
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl218,804,056 - 18,806,629 (-)Ensembl
GRCm38.p6 Ensembl218,799,245 - 18,801,818 (-)Ensembl
RefSeq Acc Id: NR_131254
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39218,804,056 - 18,806,629 (-)NCBI
GRCm38218,799,245 - 18,801,818 (-)NCBI
Sequence:
Protein Sequences
Ensembl Protein ENSMUSP00000159257.2
Reference Protein Sequences
RefSeq Acc Id: ENSMUSP00000159257   ⟸   ENSMUST00000181515

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A668KLV5-F1-model_v2 AlphaFold A0A668KLV5 1-40 view protein structure


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000097638 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000181515 ENTREZGENE
  ENSMUST00000181515.2 UniProtKB/TrEMBL
MGD MGI:1914024 ENTREZGENE
NCBI Gene 66774 ENTREZGENE
PhenoGen Carlr PhenoGen
RNAcentral URS0000812209 RNACentral
UniProt A0A668KLV5_MOUSE UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-05-07 Carlr  cardiac and apoptosis-related long non-coding RNA  4933439G12Rik  RIKEN cDNA 4933439G12 gene  Symbol and/or name change 5135510 APPROVED