1700031P21Rik (RIKEN cDNA 1700031P21 gene) - Rat Genome Database

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Gene: 1700031P21Rik (RIKEN cDNA 1700031P21 gene) Mus musculus
Analyze
Symbol: 1700031P21Rik
Name: RIKEN cDNA 1700031P21 gene
RGD ID: 1611848
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: PREDICTED
Previously known as: hypothetical protein LOC73278; uncharacterized protein LOC73278
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391252,646,767 - 52,649,105 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1252,646,764 - 52,649,105 (-)EnsemblGRCm39 Ensembl
GRCm381252,599,984 - 52,602,322 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1252,599,981 - 52,602,322 (-)EnsemblGRCm38mm10GRCm38
Celera1253,903,741 - 53,906,077 (-)NCBICelera
Cytogenetic Map12C1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:24316575  


Genomics

Variants

.
Variants in 1700031P21Rik
84 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142234Tmc1m3_mTmc1 modifier 3 (mouse)Not determined12541844077031203Mouse
27226753Femd7_mfemur midshaft diameter 7, 10 week (mouse)12955000084146774Mouse
13207568Tcq14_mtotal cholesterol QTL 14 (mouse)121166000197176774Mouse
13524839Ppiq10_mprepulse inhibition QTL 10 (mouse)121304319554945798Mouse
1558978Cplaq10_mcircadian period of locomotor activity 10 (mouse)Not determined121534102679040364Mouse
1301574Lmblgq5_mlimb length QTL 5 (mouse)Not determined121759644780956883Mouse
12904956Edlmmq10_mextensor digitorum longus muscle mass QTL 10 (mouse)121973983353739833Mouse
1302172Skts5_mskin tumor susceptibility 5 (mouse)Not determined122214886656149016Mouse
1301989Hdlq18_mHDL QTL 18 (mouse)Not determined122916068563160884Mouse
1300636Gct2_mgranulosa cell tumorigenesis 2 (mouse)Not determined122916068563160884Mouse
4141843Moen3_mmodifier of engrailed QTL 3 (mouse)Not determined122980158463801733Mouse
14747008Mancz10_mmandible centroid size 10 (mouse)122986352263863522Mouse
10402492Dipa8_mdrug induced psychomotor activation 8 (mouse)Not determined123493387268934019Mouse
1300818Bbaa10_mB.burgdorferi-associated arthritis 10 (mouse)Not determined123509100465511019Mouse
4142002Tbqt3_mtibia bone quality traits 3 (mouse)Not determined1235285496109936243Mouse
1357479Splwt1_mspleen weight 1 (mouse)Not determined124169317590887526Mouse


Expression


Sequence


RefSeq Acc Id: ENSMUST00000186498
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1252,648,396 - 52,649,102 (-)Ensembl
GRCm38.p6 Ensembl1252,601,613 - 52,602,319 (-)Ensembl
RefSeq Acc Id: ENSMUST00000187526
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1252,646,764 - 52,649,105 (-)Ensembl
GRCm38.p6 Ensembl1252,599,981 - 52,602,322 (-)Ensembl
RefSeq Acc Id: ENSMUST00000191400
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1252,648,378 - 52,649,101 (-)Ensembl
GRCm38.p6 Ensembl1252,601,595 - 52,602,318 (-)Ensembl
RefSeq Acc Id: NR_045910
RefSeq Status: PREDICTED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391252,646,767 - 52,649,105 (-)NCBI
GRCm381252,599,984 - 52,602,322 (-)ENTREZGENE
Celera1253,903,741 - 53,906,077 (-)ENTREZGENE
cM Map12 ENTREZGENE
Sequence:
Promoters
RGD ID:8678260
Promoter ID:EPDNEW_M17161
Type:initiation region
Name:1700031P21Rik_1
Description:Mus musculus RIKEN cDNA 1700031P21 gene , long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381252,602,318 - 52,602,378EPDNEW
RGD ID:15094115
Promoter ID:EPDNEWNC_M2016
Type:initiation region
Name:1700031P21Rik_1
Description:RIKEN cDNA 1700031P21 gene [Source:MGISymbol;Acc:MGI:1920528]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381252,602,318 - 52,602,378EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000100315 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000187526 ENTREZGENE
MGD MGI:1920528 ENTREZGENE
NCBI Gene 73278 ENTREZGENE
PhenoGen 1700031P21Rik PhenoGen
RNAcentral URS000075CE78 RNACentral