D130009I18Rik (RIKEN cDNA D130009I18 gene) - Rat Genome Database

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Gene: D130009I18Rik (RIKEN cDNA D130009I18 gene) Mus musculus
Analyze
Symbol: D130009I18Rik
Name: RIKEN cDNA D130009I18 gene
RGD ID: 1611526
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: PREDICTED
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3914104,876,580 - 105,204,219 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl14104,850,227 - 105,204,219 (+)EnsemblGRCm39 Ensembl
GRCm3814104,639,144 - 104,966,783 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl14104,612,791 - 104,966,783 (+)EnsemblGRCm38mm10GRCm38
MGSCv3714105,038,361 - 105,366,000 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3614105,038,341 - 105,129,701 (+)NCBIMGSCv36mm8
Celera14103,249,853 - 103,582,653 (+)NCBICelera
Cytogenetic Map14E2.3NCBI
cM Map1454.53NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:21267068  


Genomics

Variants

.
Variants in D130009I18Rik
11646 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
1300551Lprm3_mlymphoproliferation modifier 3 (mouse)Not determined1471221224105221344Mouse
1301844Pgia29_mproteoglycan induced arthritis 29 (mouse)Not determined1474352296108352384Mouse
1558819Ossc2_mosteosarcoma susceptibility 2 (mouse)Not determined1474394976108395093Mouse
14928314Manh77_mmandible shape 77 (mouse)1476767790110767790Mouse
1558823Tbbmd6_mtotal body bone mineral density 6 (mouse)Not determined1477073696111073787Mouse
4142508Tgq25_mtriglyceride QTL 25 (mouse)Not determined85134068119134068Mouse
12792981Fbmd5_mfemoral bone mineral density 5, females only (mouse)1499838217125033054Mouse

Markers in Region
47.MMHAP79FLH5.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3814104,747,781 - 104,747,952UniSTSGRCm38
MGSCv3714105,146,998 - 105,147,169UniSTSGRCm37
Celera14103,362,698 - 103,362,869UniSTS
Cytogenetic Map14E2.3UniSTS
Whitehead_YAC14 UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000227935
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl14104,850,227 - 105,154,875 (+)Ensembl
GRCm38.p6 Ensembl14104,612,791 - 104,917,439 (+)Ensembl
RefSeq Acc Id: ENSMUST00000228036
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl14104,876,580 - 105,204,219 (+)Ensembl
GRCm38.p6 Ensembl14104,639,144 - 104,966,783 (+)Ensembl
RefSeq Acc Id: ENSMUST00000228435
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl14104,876,560 - 105,105,518 (+)Ensembl
GRCm38.p6 Ensembl14104,639,124 - 104,868,082 (+)Ensembl
RefSeq Acc Id: ENSMUST00000228477
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl14104,876,560 - 105,152,665 (+)Ensembl
GRCm38.p6 Ensembl14104,639,124 - 104,915,229 (+)Ensembl
RefSeq Acc Id: NR_015593
RefSeq Status: PREDICTED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3914104,876,580 - 105,204,219 (+)NCBI
GRCm3814104,639,144 - 104,966,783 (+)ENTREZGENE
MGSCv3714105,038,361 - 105,366,000 (+)RGD
Celera14103,249,853 - 103,582,653 (+)RGD
cM Map14 ENTREZGENE
Sequence:
Promoters
RGD ID:15094502
Promoter ID:EPDNEWNC_M2405
Type:multiple initiation site
Name:D130009I18Rik_1
Description:RIKEN cDNA D130009I18 gene [Source:MGISymbol;Acc:MGI:2443663]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3814104,639,128 - 104,639,188EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000115432 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000228036 ENTREZGENE
MGD MGI:2443663 ENTREZGENE
NCBI Gene 320249 ENTREZGENE
PhenoGen D130009I18Rik PhenoGen
RNAcentral URS0000CCBE0C RNACentral