Ccdc194 (coiled-coil domain containing 194) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References FTP Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) RatMine GViewer (Genome Viewer) Overgo Probe Designer ACP Haplotyper Genome Scanner
Aging & Age-Related Disease Cancer Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Ccdc194 (coiled-coil domain containing 194) Mus musculus
Analyze
Symbol: Ccdc194
Name: coiled-coil domain containing 194
RGD ID: 1611476
MGI Page MGI
Description: Orthologous to human CCDC194 (coiled-coil domain containing 194).
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: C430049E01Rik; coiled-coil domain-containing protein 194; nestin; RIKEN cDNA C430049E01 gene
RGD Orthologs
Human
Dog
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39871,972,762 - 71,978,369 (-)NCBIGRCm39mm39
GRCm38871,520,118 - 71,525,725 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl871,520,120 - 71,525,711 (-)EnsemblGRCm38mm10GRCm38
Celera874,030,387 - 74,038,131 (-)NCBICelera
Cytogenetic Map8B3.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073  


Genomics

Comparative Map Data
Ccdc194
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39871,972,762 - 71,978,369 (-)NCBIGRCm39mm39
GRCm38871,520,118 - 71,525,725 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl871,520,120 - 71,525,711 (-)EnsemblGRCm38mm10GRCm38
Celera874,030,387 - 74,038,131 (-)NCBICelera
Cytogenetic Map8B3.3NCBI
CCDC194
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1917,390,509 - 17,394,158 (-)EnsemblGRCh38hg38GRCh38
GRCh381917,389,069 - 17,394,593 (-)NCBIGRCh38GRCh38hg38GRCh38
Cytogenetic Map19p13.11NCBI
LOC102155151
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2045,392,103 - 45,395,187 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12045,392,460 - 45,395,513 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832016544117238700Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined834642776114837007Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83616300092728652Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837400000109600000Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)83970925694689598Mouse
1301544Iba3_minduction of brown adipocytes 3 (mouse)Not determined84429488078295025Mouse
1301717Adip4_madiposity 4 (mouse)Not determined84763703081637146Mouse
10766453Char11_mP. chabaudi malaria resistance QTL 11 (mouse)84763703081637146Mouse
1301441Skull11_mskull morphology 11 (mouse)Not determined84773713481737254Mouse
1357715Alaa3_malopecia areata 3 (mouse)Not determined84879293982793021Mouse
14746987Manh64_mmandible shape 64 (mouse)85005330684053306Mouse
14747005Mancz7_mmandible centroid size 7 (mouse)85005330684053306Mouse
14700686Civq3_mcerebral infarct volume QTL 3 (mouse)85188219185882191Mouse
1301506Aevm1_mautoimmune extremity vasculitis in MRL mice 1 (mouse)Not determined85428781788287993Mouse
1301952Im3_mimmunoregulatory 3 (mouse)Not determined85470661488706763Mouse
10412287Carg3_mCandida albicans resistance gene 3 (mouse)Not determined85554502889545028Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85820147992201479Mouse
10043975Obq31_mobesity QTL 31 (mouse)Not determined85840977692409776Mouse
1301688Orch6_mautoimmune orchitis resistance 6 (mouse)Not determined86078685094786976Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6346010797460107Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86393954797939696Mouse
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined86535776899357920Mouse
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined86560020799600347Mouse
10766466Char12_mP. chabaudi malaria resistance QTL 12 (mouse)86826982782600347Mouse
1301767Fcsa2_mfemoral cross-sectional area 2 (mouse)Not determined870305375104305495Mouse
4142283Imraq2_mimmune response to AAV2 QTL 2 (mouse)Not determined870305375104305495Mouse
1558780Idd22_minsulin dependent diabetes susceptibility 22 (mouse)Not determined871102903105103009Mouse
4141395Char2a_mP. chabaudi malaria resistance QTL 2a (mouse)Not determined7113678390202598Mouse
4142023W3q5_mweight 3 weeks QTL 5 (mouse)Not determined71287817123895615Mouse
1357708Orq1_movulation rate QTL 1 (mouse)Not determined871287817123895615Mouse
1301872Cd4ts3_mCD4 T cell subset 3 (mouse)Not determined871396181105396393Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000207913   ⟹   ENSMUSP00000146946
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl871,520,120 - 71,525,711 (-)Ensembl
RefSeq Acc Id: NM_001370849   ⟹   NP_001357778
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39871,972,762 - 71,978,369 (-)NCBI
GRCm38871,520,118 - 71,525,725 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001357778 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein A0A140LIT1 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001357778   ⟸   NM_001370849
- Peptide Label: precursor
RefSeq Acc Id: ENSMUSP00000146946   ⟸   ENSMUST00000207913


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3588239 AgrOrtholog
Ensembl Genes ENSMUSG00000108900 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000146946 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000207913 ENTREZGENE, UniProtKB/Swiss-Prot
MGD MGI:3588239 ENTREZGENE
NCBI Gene 619297 ENTREZGENE
PhenoGen Ccdc194 PhenoGen
UniGene Mm.489394 ENTREZGENE
UniProt A0A140LIT1 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-06-05 Ccdc194  coiled-coil domain containing 194  C430049E01Rik  RIKEN cDNA C430049E01 gene  Symbol and/or name change 5135510 APPROVED