1700023F02Rik (RIKEN cDNA 1700023F02 gene) - Rat Genome Database

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Gene: 1700023F02Rik (RIKEN cDNA 1700023F02 gene) Mus musculus
Analyze
Symbol: 1700023F02Rik
Name: RIKEN cDNA 1700023F02 gene
RGD ID: 1611421
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: AV205046; Gm31056; hypothetical protein LOC69433; predicted gene, 31056
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391065,956,388 - 66,036,270 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1065,956,303 - 66,090,002 (-)EnsemblGRCm39 Ensembl
GRCm381066,120,609 - 66,200,491 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1066,120,605 - 66,254,223 (-)EnsemblGRCm38mm10GRCm38
MGSCv371065,583,357 - 65,586,812 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361065,583,357 - 65,589,378 (-)NCBIMGSCv36mm8
Celera1067,211,213 - 67,214,668 (-)NCBICelera
Cytogenetic Map10B5.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:14610273   PMID:16141072   PMID:16141073   PMID:24316575  


Genomics

Variants

.
Variants in 1700023F02Rik
2834 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357740Obsty3_mobesity 3 (mouse)Not determined108235478116190980Mouse
1301386Sysbp1_msystolic blood pressure 1 (mouse)Not determined101010826587401095Mouse
1357825Kidpq2_mkidney weight percentage QTL 2 (mouse)Not determined101270405184079784Mouse
1357656Hrtq3_mheart weight QTL 3 (mouse)Not determined101270405184079784Mouse
1357864Scfpq1_msubcutaneous fat pad percentage QTL 1 (mouse)Not determined101270405184079784Mouse
39128215Lwq17_mliver weight QTL 17 (mouse)101270405184079784Mouse
4141956Egq7_mearly growth QTL 7 (mouse)Not determined1270405184079784Mouse
4141943W6q6_mweight 6 weeks QTL 6 (mouse)Not determined1270405184079784Mouse
4142272W10q5_mweight 10 weeks QTL 5 (mouse)Not determined1270405184079784Mouse
4142380W3q11_mweight 3 weeks QTL 11 (mouse)Not determined1270405184079784Mouse
1302067Scc9_mcolon tumor susceptibility 9 (mouse)Not determined1018259333125575232Mouse
27226772Tibl13_mtibia length 13, 10 week (mouse)1018875748129635869Mouse
1558757Eae34_mexperimental allergic encephalomyelitis susceptibility 34 (mouse)Not determined1021408154114217230Mouse
1301003Lmblgq4_mlimb length QTL 4 (mouse)Not determined102159119268091639Mouse
26884403Cvht8_mcranial vault height 8, 16 week (mouse)102287589991035862Mouse
26884426Cvht1_mcranial vault height 1, 5 week (mouse)1024675898121035905Mouse
27095920Pglq9_mpelvic girdle length QTL 9, 10 week (mouse)103377599670835830Mouse
27095911Pglq15_mpelvic girdle length QTL 15, 16 week (mouse)1039175996129635869Mouse
27226764Tibl19_mtibia length 19, 16 week (mouse)1039175996129635869Mouse
4141070Ltgq1_mliver triglyceride QTL 1 (mouse)Not determined4123732675237326Mouse
26884411Bzwq8_mbi-zygomatic width QTL 8, 10 week (mouse)1044876096115935905Mouse
26884407Bzwq14_mbi-zygomatic width QTL 14, 16 wee (mouse)1045476096120635905Mouse
26884421Cvht5_mcranial vault height 5, 10 week (mouse)104557609669135830Mouse
26884400Huml5_mhumerus length 5, 16 week (mouse)104627609669235830Mouse
4142313Angvq1_mangiogenesis by VEGF QTL 1 (mouse)Not determined4672040382491121Mouse
4141159Phl2_mprogressive hearing loss 2 (mouse)Not determined104797449970112651Mouse
1302150Bbaa18_mB.burgdorferi-associated arthritis 18 (mouse)Not determined104933801283338157Mouse
10045641Jckm3_mjuvenile cystic kidney modifier 3 (mouse)Not determined104984818783848412Mouse
1300597Skull14_mskull morphology 14 (mouse)Not determined104984818783848412Mouse
4142169Pbwg16_mpostnatal body weight growth 16 (mouse)Not determined104984818783848412Mouse
1357737Hpcr2_mhepatocarcinogen resistance 2 (mouse)Not determined104984822283848397Mouse
1301966Lifespan2_mlife span 2 (mouse)Not determined104984822283848397Mouse
1301502Eae17_msusceptibility to experimental allergic encephalomyelitis 17 (mouse)Not determined105109149085091639Mouse
1300882Ath17_matherosclerosis 17 (mouse)Not determined105109149085091639Mouse
1301380Cia8_mcollagen induced arthritis QTL 8 (mouse)Not determined105149340082491121Mouse
14746991Manh68_mmandible shape 68 (mouse)105228049786280497Mouse
1301787Bsc1_mbrain size control 1 (mouse)Not determined105851696992517096Mouse
26884450Sklq15_mskull length QTL 15, 16 week (mouse)1059335822122335905Mouse
13208560Wght9_mweight 9 (mouse)1059835822120835905Mouse
38455999Lick3_mlick rate 3 (mouse)106187303169373082Mouse
26884424Zlq9_mzygomatic length QTL 9, 16 week (mouse)1063935779115935905Mouse
1302060El3_mepilepsy 3 (mouse)Not determined106549093899491121Mouse
1300533Aem3_manti-erythrocyte autoantibody modifier 3 (mouse)Not determined106549093899491121Mouse
1301737Insq9_minsulin QTL 9 (mouse)Not determined106549093899491121Mouse

Markers in Region
AV205046  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381066,120,685 - 66,120,821UniSTSGRCm38
MGSCv371065,583,433 - 65,583,569UniSTSGRCm37
Celera1067,211,289 - 67,211,425UniSTS
Cytogenetic Map10B5.1UniSTS
Whitehead/MRC_RH10767.04UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000186036
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1065,956,388 - 65,959,850 (-)Ensembl
GRCm38.p6 Ensembl1066,120,609 - 66,124,071 (-)Ensembl
RefSeq Acc Id: ENSMUST00000188279
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1065,956,455 - 65,958,855 (-)Ensembl
GRCm38.p6 Ensembl1066,120,676 - 66,123,076 (-)Ensembl
RefSeq Acc Id: ENSMUST00000189619
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1065,956,384 - 66,090,002 (-)Ensembl
GRCm38.p6 Ensembl1066,120,605 - 66,254,223 (-)Ensembl
RefSeq Acc Id: ENSMUST00000190260
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1065,956,384 - 65,959,829 (-)Ensembl
GRCm38.p6 Ensembl1066,120,605 - 66,124,050 (-)Ensembl
RefSeq Acc Id: ENSMUST00000191223
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1065,956,386 - 66,036,270 (-)Ensembl
GRCm38.p6 Ensembl1066,120,609 - 66,124,064 (-)Ensembl
RefSeq Acc Id: ENSMUST00000244811
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1065,956,303 - 66,036,227 (-)Ensembl
RefSeq Acc Id: NR_168557
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391065,956,388 - 66,036,270 (-)NCBI
GRCm381066,120,609 - 66,200,491 (-)NCBI
Sequence:
RefSeq Acc Id: NR_168558
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391065,956,388 - 66,036,270 (-)NCBI
GRCm381066,120,609 - 66,200,491 (-)NCBI
Sequence:
RefSeq Acc Id: NR_168559
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391065,956,388 - 66,036,270 (-)NCBI
GRCm381066,120,609 - 66,200,491 (-)NCBI
Sequence:
RefSeq Acc Id: NR_168560
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391065,956,388 - 66,036,270 (-)NCBI
GRCm381066,120,609 - 66,200,491 (-)NCBI
Sequence:
RefSeq Acc Id: NR_168561
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391065,956,388 - 66,036,270 (-)NCBI
GRCm381066,120,609 - 66,200,491 (-)NCBI
Sequence:
RefSeq Acc Id: NR_168562
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391065,956,388 - 66,036,270 (-)NCBI
GRCm381066,120,609 - 66,200,491 (-)NCBI
Sequence:
RefSeq Acc Id: NR_168565
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391065,956,388 - 66,036,270 (-)NCBI
GRCm381066,120,609 - 66,200,491 (-)NCBI
Sequence:
RefSeq Acc Id: NR_168566
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391065,956,388 - 66,036,270 (-)NCBI
GRCm381066,120,609 - 66,200,491 (-)NCBI
Sequence:
RefSeq Acc Id: NR_168567
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391065,956,388 - 66,036,270 (-)NCBI
GRCm381066,120,609 - 66,200,491 (-)NCBI
Sequence:
RefSeq Acc Id: NR_168568
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391065,956,388 - 66,036,270 (-)NCBI
GRCm381066,120,609 - 66,200,491 (-)NCBI
Sequence:
Promoters
RGD ID:8672186
Promoter ID:EPDNEW_M14123
Type:initiation region
Name:1700023F02Rik_1
Description:Mus musculus RIKEN cDNA 1700023F02 gene , long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381066,124,064 - 66,124,124EPDNEW
RGD ID:15093787
Promoter ID:EPDNEWNC_M1688
Type:multiple initiation site
Name:1700023F02Rik_1
Description:RIKEN cDNA 1700023F02 gene [Source:MGISymbol;Acc:MGI:1916683]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381066,124,064 - 66,124,124EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000100000 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000191223 ENTREZGENE
MGD MGI:1916683 ENTREZGENE
NCBI Gene 69433 ENTREZGENE
PhenoGen 1700023F02Rik PhenoGen
RNAcentral URS0001BBE393 RNACentral
  URS0001BBE3AE RNACentral
  URS0001BBE3F2 RNACentral
  URS0001BBE455 RNACentral
  URS0001BBE463 RNACentral
  URS0001BBE47C RNACentral
  URS0001BBE4A0 RNACentral
  URS0001BBE4B6 RNACentral
  URS0001BBE52E RNACentral
  URS0001BBE558 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-05-28 1700023F02Rik  RIKEN cDNA 1700023F02 gene  Gm31056  predicted gene, 31056  Data merged from RGD:9615680 737654 PROVISIONAL