Kifc5b (kinesin family member C5B) - Rat Genome Database

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Gene: Kifc5b (kinesin family member C5B) Mus musculus
Analyze
No known orthologs.
Symbol: Kifc5b
Name: kinesin family member C5B
RGD ID: 1611161
MGI Page MGI
Description: Predicted to enable ATP hydrolysis activity; microtubule binding activity; and microtubule motor activity. Predicted to be involved in microtubule-based movement; mitotic metaphase chromosome alignment; and mitotic spindle assembly. Predicted to be part of kinesin complex. Predicted to be active in microtubule cytoskeleton and nucleus. Is expressed in several structures, including alimentary system; brain; genitourinary system; respiratory system; and sensory organ. Orthologous to human KIFC1 (kinesin family member C1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Hset; Kifc5a; kinesin family c-terminal 5A; kinesin family c-terminal 5B; kinesin family member C5A; kinesin-related protein KIFC5A; KNSL2; MGC76666
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391727,136,065 - 27,151,553 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1727,136,065 - 27,151,557 (+)EnsemblGRCm39 Ensembl
GRCm381726,917,091 - 26,932,579 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1726,917,091 - 26,932,583 (+)EnsemblGRCm38mm10GRCm38
MGSCv371727,054,036 - 27,069,524 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361726,644,739 - 26,659,838 (+)NCBIMGSCv36mm8
Celera1727,453,616 - 27,469,189 (+)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1713.6NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9115736   PMID:9339368   PMID:10349636   PMID:10775188   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11389549   PMID:11416179   PMID:12466851   PMID:12477932   PMID:14610273  
PMID:14681479   PMID:15112104   PMID:16141072   PMID:16141073   PMID:16638812   PMID:17360972   PMID:18799693   PMID:20360068   PMID:21873635   PMID:23019375   PMID:24483844   PMID:29091030  
PMID:34133714  


Genomics

Variants

.
Variants in Kifc5b
547 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:155
Count of miRNA genes:145
Interacting mature miRNAs:147
Transcripts:ENSMUST00000078961
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1302100Circp2_mcircadian photosensitivity 2 (mouse)Not determined17129198453Mouse
12910527Nrq1a_mnoise-induced hearing loss resistant QTL 1a (mouse)17129198453Mouse
12910528Nrq1_mnoise-induced hearing loss resistant QTL 1 (mouse)17129198453Mouse
13524851Asrq8_macoustic startle response 8 (mouse)17131030170Mouse
10412276Leci2_mleukocyte endothelial cell interactions 2 (mouse)Not determined17334817537348299Mouse
1300890Bhr3_mbronchial hyperresponsiveness 3 (mouse)Not determined17397489048866091Mouse
1301327Lmr7_mleishmaniasis resistance 7 (mouse)Not determined17485475227715939Mouse
4141215Mnic1_mmacronutrient intake, carbohydrate 1 (mouse)Not determined485475245670266Mouse
1300706Alan1_malloantigen response 1 (mouse)Not determined17485475246469702Mouse
1357789Kdnw3_mkidney weight 3 (mouse)Not determined17485475247885665Mouse
4141272Tfv1_mtotal food volume 1 (mouse)Not determined485475265637357Mouse
10043949Pbft7_mpercent body fat 7 (mouse)Not determined17689393640893936Mouse
4141608Phl1_mprogressive hearing loss 1 (mouse)Not determined17787584329487423Mouse
1301935Skull24_mskull morphology 24 (mouse)Not determined17858491442585149Mouse
1300787Cd8mts5_mCD8 memory T cell subset 5 (mouse)Not determined17858491442585149Mouse
1301338Lmr1_mleishmaniasis resistance 1 (mouse)Not determined171008134086996400Mouse
1302028Asbb3_mautoimmune susceptibility in C57BL/6J and BALB/c 3 (mouse)Not determined171087811944878219Mouse
4142342Lfnq4_mlung function QTL 4 (mouse)Not determined1120648439364059Mouse
4141067Hbnr2_mHeligmosomoides bakeri nematode resistance 2 (mouse)Not determined1188597145886119Mouse
14747010Mancz14_mmandible centroid size 14 (mouse)171199818445998184Mouse
4142150Stheal11_msoft tissue heal 11 (mouse)Not determined171228621183361768Mouse
12904946Tammq8_mtibialis anterior muscle mass QTL 8 (mouse)171245178746451787Mouse
13524847Asrq8a_macoustic startle response 8a (mouse)171264696146646961Mouse
11081168Tir7_mtrypanosome infection response 7 (mouse)171412337248123496Mouse
1300995Fembrs4_mfemur breaking strength 4 (mouse)Not determined171506165249061760Mouse
1300914Pcir4_mperiosteal circumference 4 (mouse)Not determined171506165249061760Mouse
1302070Tbbmd7_mtotal body bone mineral density 7 (mouse)Not determined171506165249061760Mouse
1558886Lgth9_mbody length 9 (mouse)Not determined171506165249061760Mouse
1302140Wta4_mweight adult 4 (mouse)Not determined171681972150819843Mouse
1302152Skull25_mskull morphology 25 (mouse)Not determined171681972150819843Mouse
1302038Radpf1_mradiation pulmonary fibrosis 1 (mouse)Not determined171683545533819843Mouse
10412083Sm2_msusceptibility to Schistosoma mansoni infection 2 (mouse)Not determined171702994351030078Mouse
13452396Leusq3_mleucocytosis susceptibility QTL 3 (mouse)171746220851462345Mouse
13452399Leusq6_mleucocytosis susceptibility QTL 6 (mouse)171746220851462345Mouse
10412214Sxbq3_mSGC/Knj cross B6 QTL 3 (mouse)Not determined171746220851462345Mouse
1300535Char3_mP. chabaudi malaria resistance QTL 3 (mouse)Not determined171746220851462345Mouse
1301840Ssial4_msusceptibility to sialadenitiss 4 (mouse)Not determined171817541252178214Mouse
1301331Lbw1_mlupus NZB x NZW 1 (mouse)Not determined171841835752420983Mouse
1301056Pas2_mpulmonary adenoma susceptibility 2 (mouse)Not determined171842214152424327Mouse
15039354Nmrs36_mNAFLD-associated magnetic resonance shift 36 (mouse)171914502553145025Mouse
1301454Eae5_msusceptibility to experimental allergic encephalomyelitis 5 (mouse)Not determined172461275058612864Mouse
10412198Sst5_msusceptibility to tuberculosis 5 (mouse)Not determined172507658355712970Mouse
10412196Bbaa28_mB.burgdorferi-associated arthritis 28 (mouse)Not determined172558491443976235Mouse
12903990Opfaq5_mopen field activity QTL 5 (mouse)172595092528992098Mouse
10412204Bbaa29_mB.burgdorferi-associated arthritis 29 (mouse)Not determined172605118560051352Mouse
1558758Kcal2_mkilocalorie 2 (mouse)Not determined172640101252911704Mouse
1300602Eye2_meye weight 2 (mouse)Not determined172650533741105037Mouse
12904013Cfq12_mconditioned fear QTL 12 (mouse)172682878130664955Mouse
1302005Loco2_mlocomotor activity 2 (mouse)Not determined172688497260885114Mouse

Markers in Region
Kifc1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381733,882,187 - 33,883,399UniSTSGRCm38
GRCm381726,924,488 - 26,925,702UniSTSGRCm38
MGSCv371734,019,132 - 34,020,344UniSTSGRCm37
MGSCv371727,061,433 - 27,062,647UniSTSGRCm37
Celera1727,461,098 - 27,462,312UniSTS
Celera1736,635,102 - 36,636,319UniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map17B1UniSTS
cM Map1718.38UniSTS
Kifc5b  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map17A3.3UniSTS
cM MapUN UniSTS
UniSTS:236125  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv37951,647,994 - 51,648,132UniSTSGRCm37
MGSCv371727,062,779 - 27,063,241UniSTSGRCm37
Celera1727,462,444 - 27,462,906UniSTS
Celera949,114,029 - 49,114,167UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000078961   ⟹   ENSMUSP00000077984
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1727,136,065 - 27,151,557 (+)Ensembl
GRCm38.p6 Ensembl1726,917,091 - 26,932,583 (+)Ensembl
RefSeq Acc Id: ENSMUST00000235206
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1727,136,147 - 27,143,798 (+)Ensembl
GRCm38.p6 Ensembl1726,917,173 - 26,924,824 (+)Ensembl
RefSeq Acc Id: ENSMUST00000235998
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1727,136,095 - 27,144,261 (+)Ensembl
GRCm38.p6 Ensembl1726,917,121 - 26,925,287 (+)Ensembl
RefSeq Acc Id: ENSMUST00000236476
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1727,136,065 - 27,140,482 (+)Ensembl
GRCm38.p6 Ensembl1726,917,091 - 26,921,508 (+)Ensembl
RefSeq Acc Id: NM_053173   ⟹   NP_444403
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391727,136,065 - 27,151,553 (+)NCBI
GRCm381726,917,091 - 26,932,579 (+)NCBI
MGSCv371727,054,036 - 27,069,524 (+)RGD
Celera1727,453,616 - 27,469,189 (+)ENTREZGENE
cM Map17 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_444403 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAF34647 (Get FASTA)   NCBI Sequence Viewer  
  AAH91570 (Get FASTA)   NCBI Sequence Viewer  
  BAC38230 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000077984
  ENSMUSP00000077984.5
  ENSMUSP00000110001.3
  ENSMUSP00000134572.2
RefSeq Acc Id: NP_444403   ⟸   NM_053173
- UniProtKB: E9PUA5 (UniProtKB/TrEMBL),   A0A068BFR6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000077984   ⟸   ENSMUST00000078961
Protein Domains
Kinesin motor

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-E9PUA5-F1-model_v2 AlphaFold E9PUA5 1-672 view protein structure
AF-Q9QWT9-F1-model_v2 AlphaFold Q9QWT9 1-674 view protein structure

Promoters
RGD ID:13675260
Promoter ID:EPDNEW_M21779
Type:initiation region
Name:Kifc5b_1
Description:Mus musculus kinesin family member C5B , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381726,917,098 - 26,917,158EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2137414 AgrOrtholog
Ensembl Genes ENSMUSG00000024301 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSG00000079553 UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000078961 ENTREZGENE
  ENSMUST00000078961.6 UniProtKB/TrEMBL
  ENSMUST00000114361.9 UniProtKB/Swiss-Prot
  ENSMUST00000173492.9 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.287.1490 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.40.850.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Kinesin-like_fam UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kinesin_motor_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kinesin_motor_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kinesin_motor_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:100502766 UniProtKB/Swiss-Prot
  mmu:16580 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:2137414 ENTREZGENE
NCBI Gene Kifc5b ENTREZGENE
PANTHER KINESIN-LIKE PROTEIN KLP-3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEIN CLARET SEGREGATIONAL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Kinesin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Kifc5b PhenoGen
PRINTS KINESINHEAVY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE KINESIN_MOTOR_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KINESIN_MOTOR_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART KISc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tropomyosin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A068BFR6 ENTREZGENE, UniProtKB/TrEMBL
  E9PUA5 ENTREZGENE, UniProtKB/TrEMBL
  KIFC1_MOUSE UniProtKB/Swiss-Prot
  Q9JKY9_MOUSE UniProtKB/TrEMBL
UniProt Secondary O08671 UniProtKB/Swiss-Prot
  O35230 UniProtKB/Swiss-Prot
  Q497Y3 UniProtKB/Swiss-Prot
  Q4A1N2 UniProtKB/Swiss-Prot
  Q6PG90 UniProtKB/Swiss-Prot
  Q8BV06 UniProtKB/Swiss-Prot
  Q99L84 UniProtKB/Swiss-Prot
  Q9JKZ0 UniProtKB/Swiss-Prot