AU040972 (expressed sequence AU040972) - Rat Genome Database
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Gene: AU040972 (expressed sequence AU040972) Mus musculus
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Symbol: AU040972
Name: expressed sequence AU040972
RGD ID: 1611089
MGI Page MGI
Description:
Type: ncrna
RefSeq Status: VALIDATED
Also known as: AU040954; hypothetical protein LOC104522
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391179,372,549 - 79,374,857 (-)NCBIGRCm39mm39
GRCm39 Ensembl1179,372,545 - 79,374,857 (-)Ensembl
GRCm381179,481,723 - 79,484,031 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1179,481,719 - 79,484,031 (-)EnsemblGRCm38mm10GRCm38
MGSCv371179,295,221 - 79,297,533 (-)NCBIGRCm37mm9NCBIm37
Celera1189,114,419 - 89,116,731 (-)NCBICelera
Cytogenetic Map11B5NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:10725249   PMID:10922068   PMID:24316575  


Genomics

Position Markers
AU040972  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381179,482,137 - 79,482,242UniSTSGRCm38
MGSCv371179,295,639 - 79,295,744UniSTSGRCm37
Celera1189,114,837 - 89,114,942UniSTS
Cytogenetic Map11B4-5UniSTS
Whitehead/MRC_RH111002.87UniSTS
AU040954  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381179,482,004 - 79,482,242UniSTSGRCm38
MGSCv371179,295,506 - 79,295,744UniSTSGRCm37
Celera1189,114,704 - 89,114,942UniSTS
Cytogenetic Map11B4-5UniSTS
Whitehead/MRC_RH111003.85UniSTS
UniSTS:236652  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381179,481,919 - 79,482,191UniSTSGRCm38
MGSCv371179,295,421 - 79,295,693UniSTSGRCm37
Celera1189,114,619 - 89,114,891UniSTS
Cytogenetic Map11B4-5UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13208559Wght10_mweight 10 (mouse)11400000089000000Mouse
13208558Lgth12_mbody length 12 (mouse)11400000095000000Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11693027789128908Mouse
1357859Lvrq7_mliver weight QTL 7 (mouse)Not determined1112318637118131898Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112318637118131898Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1917420497007000Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112185736495990405Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113600000085000000Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113639175083590530Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44739211113167183Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114527504680087498Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114581775489927907Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114629434180294436Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114642858180428696Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115018736584187585Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115260355986603559Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115349976287499911Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115423592683842826Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156973201114267131Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115786383491863932Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15861720487804412Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5882844085175703Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116179599488808902Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116226517996265327Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162700000109500000Mouse
1301999Lmr15_mleishmaniasis resistance 15 (mouse)Not determined116342858181939647Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116342858194173092Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116493951098939647Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116493951098939647Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116493951098939647Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166842594100842826Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166842594100842826Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66842594100842826Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166842594100842826Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166842594100842826Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166842594100842826Mouse
4142316Ity2b_mimmunity to S. typhimurium 2b (mouse)Not determined116718736579923086Mouse
27226783Tibl5_mtibia length 5, 5 week (mouse)1168300000102000000Mouse
1300651Pcyts3_mplasmacytoma susceptibility 3 (mouse)Not determined1170800372104800540Mouse
1301681Sle13_msystematic lupus erythematosus susceptibility 13 (mouse)Not determined1170800372104800540Mouse
1558812Rafar_mretinoic acid induced forelimb autopod reduction (mouse)Not determined1170800372104800540Mouse
4141339Nilac2_mnicotine induced locomotor activity 2 (mouse)Not determined1170800372104800540Mouse
1301404Sbmd4_mspinal bone mineral density 4 (mouse)Not determined1172128823106128908Mouse
1301078Alcp2_malcohol preference locus 2 (mouse)Not determined117231897084840636Mouse
1301310Tmevd5_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 5 (mouse)Not determined1172835299106835463Mouse
4142348Pstc2_mperiosteal circumference 2 (mouse)Not determined1172927789106927907Mouse
10043866Adip19_madiposity 19 (mouse)Not determined1172927789106927907Mouse
12903994Opfaq3_mopen field activity QTL 3 (mouse)117384671582178599Mouse
11038695Par8_mpulmonary adenoma resistance 8 (mouse)1177172953111173092Mouse
1301414Heal10_mwound healing/regeneration 10 (mouse)Not determined1177546357111546496Mouse
10045616Heal25_mwound healing/regeneration 25 (mouse)Not determined1177546357111546496Mouse
4141365Ltxs3_mlethal factor toxin susceptibility 3 (mouse)Not determined117768304780855532Mouse
1302124Eae7_msusceptibility to experimental allergic encephalomyelitis 7 (mouse)Not determined117768304799486994Mouse
10413882Moe1_mmodifier of epilepsy 1 (mouse)1177880152111880273Mouse
1301640Lore4_mloss of righting induced by ethanol 4 (mouse)Not determined1179265183107725646Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:46
Count of miRNA genes:39
Interacting mature miRNAs:45
Transcripts:ENSMUST00000165610
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000165610
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1179,481,719 - 79,484,031 (-)Ensembl
RefSeq Acc Id: NR_045305
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391179,372,549 - 79,374,857 (-)NCBI
GRCm381179,481,723 - 79,484,031 (-)ENTREZGENE
Celera1189,114,423 - 89,116,731 (-)ENTREZGENE
cM Map11 ENTREZGENE
Sequence:
Promoters
RGD ID:8675762
Promoter ID:EPDNEW_M15912
Type:multiple initiation site
Name:AU040972_1
Description:Mus musculus expressed sequence AU040972 , long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15913  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381179,483,466 - 79,483,526EPDNEW
RGD ID:15093965
Promoter ID:EPDNEWNC_M1871
Type:multiple initiation site
Name:AU040972_1
Description:expressed sequence AU040972 [Source:MGISymbol;Acc:MGI:2144426]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381179,484,034 - 79,484,094EPDNEWNC
RGD ID:8675764
Promoter ID:EPDNEW_M15913
Type:initiation region
Name:AU040972_2
Description:Mus musculus expressed sequence AU040972 , long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15912  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381179,484,043 - 79,484,103EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000091523 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000165610 ENTREZGENE
MGD MGI:2144426 ENTREZGENE
NCBI Gene 104522 ENTREZGENE
PhenoGen AU040972 PhenoGen
RNAcentral URS000075EEF0 RNACentral