1810059H22Rik (RIKEN cDNA 1810059H22 gene) - Rat Genome Database

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Gene: 1810059H22Rik (RIKEN cDNA 1810059H22 gene) Mus musculus
Analyze
Symbol: 1810059H22Rik
Name: RIKEN cDNA 1810059H22 gene
RGD ID: 1611066
MGI Page MGI
Description:
Type: gene (Ensembl: lncRNA)
Previously known as: AI452232; expressed sequence AI452232; gene model 577, (NCBI); Gm577; hypothetical LOC667386; LOC667386
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
NCBI Annotation Information: Genome Annotation Status: not in current annotation release
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39 Ensembl5148,890,558 - 148,906,932 (-)EnsemblGRCm39 Ensembl
GRCm385148,953,861 - 148,956,606 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5148,953,748 - 148,970,122 (-)EnsemblGRCm38mm10GRCm38
MGSCv375149,765,324 - 149,808,085 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365149,275,110 - 149,280,471 (-)NCBIMGSCv36mm8
Celera5146,965,545 - 147,010,726 (-)NCBICelera
Cytogenetic Map5G3NCBI
cM Map589.12NCBI


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:571
Count of miRNA genes:402
Interacting mature miRNAs:434
Transcripts:ENSMUST00000130154, ENSMUST00000131347, ENSMUST00000133693, ENSMUST00000134251
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_403091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_403092 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_403094 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_403097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_403100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_403104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_403105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_861501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_861502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_861503 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA734751 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC158782 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI428633 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI452232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK007907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK079377 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK144510 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB131118 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000203249
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5148,890,558 - 148,897,020 (-)Ensembl
GRCm38.p6 Ensembl5148,953,748 - 148,960,210 (-)Ensembl
RefSeq Acc Id: ENSMUST00000203662
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5148,895,480 - 148,906,692 (-)Ensembl
GRCm38.p6 Ensembl5148,958,670 - 148,969,882 (-)Ensembl
RefSeq Acc Id: ENSMUST00000203691
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5148,895,942 - 148,901,084 (-)Ensembl
GRCm38.p6 Ensembl5148,959,132 - 148,964,274 (-)Ensembl
RefSeq Acc Id: ENSMUST00000203736
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5148,891,454 - 148,893,307 (-)Ensembl
GRCm38.p6 Ensembl5148,954,644 - 148,956,497 (-)Ensembl
RefSeq Acc Id: ENSMUST00000204570
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5148,895,402 - 148,896,514 (-)Ensembl
GRCm38.p6 Ensembl5148,958,598 - 148,959,704 (-)Ensembl
RefSeq Acc Id: ENSMUST00000204589
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5148,895,699 - 148,896,490 (-)Ensembl
GRCm38.p6 Ensembl5148,958,889 - 148,959,680 (-)Ensembl
RefSeq Acc Id: ENSMUST00000204809
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5148,900,752 - 148,906,706 (-)Ensembl
GRCm38.p6 Ensembl5148,963,942 - 148,969,896 (-)Ensembl
RefSeq Acc Id: ENSMUST00000204941
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5148,901,571 - 148,906,932 (-)Ensembl
GRCm38.p6 Ensembl5148,964,761 - 148,970,122 (-)Ensembl
RefSeq Acc Id: XR_403091
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
Celera5146,965,538 - 146,995,188 (-)NCBI
RefSeq Acc Id: XR_403092
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
Celera5146,965,538 - 146,995,188 (-)NCBI
RefSeq Acc Id: XR_403094
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
Celera5146,965,538 - 146,995,188 (-)NCBI
RefSeq Acc Id: XR_403097
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
Celera5146,965,538 - 146,995,188 (-)NCBI
RefSeq Acc Id: XR_403100
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
Celera5146,965,538 - 146,995,188 (-)NCBI
RefSeq Acc Id: XR_403104
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
Celera5146,965,538 - 146,995,188 (-)NCBI
RefSeq Acc Id: XR_403105
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
Celera5146,965,538 - 146,995,188 (-)NCBI
RefSeq Acc Id: XR_861501
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
Celera5146,965,538 - 146,995,188 (-)NCBI
RefSeq Acc Id: XR_861502
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
Celera5146,965,538 - 146,995,188 (-)NCBI
RefSeq Acc Id: XR_861503
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
Celera5146,965,538 - 146,995,188 (-)NCBI
Promoters
RGD ID:6888930
Promoter ID:EPDNEW_M7872
Type:multiple initiation site
Name:AK007907_1
Description:n/a
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm385148,959,699 - 148,959,759EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000108207 Ensembl
MGD MGI:1917070 ENTREZGENE
NCBI Gene 69820 ENTREZGENE
PhenoGen 1810059H22Rik PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-05-19 1810059H22Rik  RIKEN cDNA 1810059H22 gene  LOC667386  hypothetical LOC667386  Symbol and/or name change 5135510 APPROVED
2016-05-09 LOC667386  hypothetical LOC667386  AI452232  expressed sequence AI452232  Data merged from RGD:1611128 737654 PROVISIONAL
2016-04-12 LOC667386  hypothetical LOC667386  Gm577  gene model 577, (NCBI)  Symbol and/or name change 5135510 APPROVED