4921504A21Rik (RIKEN cDNA 4921504A21 gene) - Rat Genome Database

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Gene: 4921504A21Rik (RIKEN cDNA 4921504A21 gene) Mus musculus
Analyze
Symbol: 4921504A21Rik
Name: RIKEN cDNA 4921504A21 gene
RGD ID: 1610869
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC70832
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39519,407,366 - 19,431,553 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl519,407,366 - 19,431,718 (-)EnsemblGRCm39 Ensembl
GRCm38519,202,368 - 19,226,555 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl519,202,368 - 19,226,555 (-)EnsemblGRCm38mm10GRCm38
MGSCv37518,708,186 - 18,732,527 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36518,709,665 - 18,732,369 (-)NCBIMGSCv36mm8
Celera516,155,361 - 16,180,258 (-)NCBICelera
Cytogenetic Map5A3NCBI
cM Map58.6NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073  


Genomics

Variants

.
Variants in 4921504A21Rik
786 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:55
Count of miRNA genes:53
Interacting mature miRNAs:55
Transcripts:ENSMUST00000180594
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141234Pbwg14_mpostnatal body weight growth 14 (mouse)Not determined5121273552Mouse
1301468Eye1_meye weight 1 (mouse)Not determined5121929650Mouse
10412081Bwq13_mbody weight QTL 13 (mouse)Not determined5123606323Mouse
12904958Gmmq8_mgastrocnemius muscle mass QTL 8 (mouse)5129421124Mouse
10401122Pgia41_mproteoglycan induced arthritis 41 (mouse)Not determined582314434823280Mouse
12738412Lfibq4_mliver fibrosis QTL 4 (mouse)5315000020799180Mouse
15039371Nmrs21_mNAFLD-associated magnetic resonance shift 21 (mouse)5350482337504823Mouse
13442491Mecth1_mmechanosensation threshold 1 (mouse)5451800019834998Mouse
1301806Actd2_mactivity-distance traveled 2 (mouse)Not determined5538452039384652Mouse
4141207Imrfq1_mimmune response to Factor IX QTL 1 (mouse)Not determined5812411742124239Mouse
7394748Mom5_mmodifier of Min 5 (mouse)Not determined5884767233475637Mouse
1301693Sle6_msystemic lupus erythematosus susceptibility 6 (mouse)Not determined5889069387841837Mouse
1357478Kdnw1_mkidney weight 1 (mouse)Not determined5891594940529869Mouse
14696730Kidlq1_mkidney weight, left QTL 1 (mouse)51356315247563152Mouse
1301685Estq2_mestradiol regulated response QTL 2 (mouse)Not determined51563408449634190Mouse
13432187Actdse1_mactivity chamber total difference saline/ethanol 1 (mouse)51819918023099180Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000180594
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl519,407,366 - 19,431,621 (-)Ensembl
GRCm38.p6 Ensembl519,202,368 - 19,226,555 (-)Ensembl
RefSeq Acc Id: ENSMUST00000197496
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl519,408,019 - 19,431,718 (-)Ensembl
GRCm38.p6 Ensembl519,203,293 - 19,226,168 (-)Ensembl
RefSeq Acc Id: NR_102341
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39519,407,366 - 19,431,553 (-)NCBI
GRCm38519,202,368 - 19,226,555 (-)NCBI
Celera516,155,361 - 16,180,104 (-)NCBI
Sequence:
RefSeq Acc Id: NR_102342
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39519,407,366 - 19,431,553 (-)NCBI
GRCm38519,202,368 - 19,226,555 (-)NCBI
Celera516,155,361 - 16,180,104 (-)NCBI
Sequence:
Promoters
RGD ID:6837860
Promoter ID:MM_KWN:41460
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Lung,   MEF_B4,   MEF_B6
Transcripts:AK046351_4921504A21RIK,   NM_001170746
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36518,732,291 - 18,733,882 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000097626 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000180594 ENTREZGENE
MGD MGI:1918082 ENTREZGENE
NCBI Gene 70832 ENTREZGENE
PhenoGen 4921504A21Rik PhenoGen
RNAcentral URS000075B3C1 RNACentral
  URS000075EDF0 RNACentral