1700080N15Rik (RIKEN cDNA 1700080N15 gene) - Rat Genome Database

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Gene: 1700080N15Rik (RIKEN cDNA 1700080N15 gene) Mus musculus
Analyze
Symbol: 1700080N15Rik
Name: RIKEN cDNA 1700080N15 gene
RGD ID: 1610793
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: 4933408D14Rik; hypothetical protein LOC73489
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3924,136,876 - 4,145,952 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl24,136,874 - 4,145,952 (-)EnsemblGRCm39 Ensembl
GRCm3824,132,065 - 4,141,141 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl24,132,063 - 4,141,141 (-)EnsemblGRCm38mm10GRCm38
MGSCv3724,056,716 - 4,062,125 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3624,056,716 - 4,062,125 (-)NCBIMGSCv36mm8
Celera24,078,082 - 4,087,341 (-)NCBICelera
Cytogenetic Map2A1NCBI
cM Map22.39NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:24316575  


Genomics

Variants

.
Variants in 1700080N15Rik
374 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:205
Count of miRNA genes:157
Interacting mature miRNAs:167
Transcripts:ENSMUST00000141488, ENSMUST00000154360, ENSMUST00000155091
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10045633Heal15_mwound healing/regeneration 15 (mouse)Not determined2121989642Mouse
4141836Tgq11_mtriglyceride QTL 11 (mouse)Not determined125324559Mouse
4142333Tgq10_mtriglyceride QTL 10 (mouse)Not determined125324559Mouse
1301838Sluc16_msusceptibility to lung cancer 16 (mouse)Not determined2126529589Mouse
12904743Carcdq3_mcardiac collagen deposition QTL 3 (mouse)2323494028179150Mouse
1301769Orgwq2_morgan weight QTL 2 (mouse)Not determined2388712693421651Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000141488
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl24,136,874 - 4,145,952 (-)Ensembl
GRCm38.p6 Ensembl24,132,063 - 4,141,141 (-)Ensembl
RefSeq Acc Id: ENSMUST00000154360
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl24,140,290 - 4,145,950 (-)Ensembl
GRCm38.p6 Ensembl24,135,479 - 4,141,139 (-)Ensembl
RefSeq Acc Id: ENSMUST00000155091
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl24,136,876 - 4,145,952 (-)Ensembl
GRCm38.p6 Ensembl24,132,065 - 4,141,141 (-)Ensembl
RefSeq Acc Id: NR_040500
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3924,136,876 - 4,145,952 (-)NCBI
GRCm3824,132,065 - 4,141,141 (-)ENTREZGENE
Celera24,078,082 - 4,087,341 (-)ENTREZGENE
cM Map2 ENTREZGENE
Sequence:
Promoters
RGD ID:6876234
Promoter ID:EPDNEW_M1568
Type:multiple initiation site
Name:1700080N15Rik_1
Description:Mus musculus RIKEN cDNA 1700080N15 gene , long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3824,141,141 - 4,141,201EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000084859 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000155091 ENTREZGENE
MGD MGI:1920739 ENTREZGENE
NCBI Gene 73489 ENTREZGENE
PhenoGen 1700080N15Rik PhenoGen
RNAcentral URS000075C56E RNACentral