A230103J11Rik (RIKEN cDNA A230103J11 gene) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: A230103J11Rik (RIKEN cDNA A230103J11 gene) Mus musculus
Analyze
Symbol: A230103J11Rik
Name: RIKEN cDNA A230103J11 gene
RGD ID: 1610466
MGI Page MGI
Description:
Type: ncrna
RefSeq Status: VALIDATED
Also known as: hypothetical protein LOC320466
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39885,779,789 - 85,787,089 (-)NCBIGRCm39mm39
GRCm38885,053,160 - 85,060,460 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl885,053,160 - 85,060,460 (-)EnsemblGRCm38mm10GRCm38
MGSCv37887,577,049 - 87,584,342 (-)NCBIGRCm37mm9NCBIm37
Celera889,347,901 - 89,355,193 (-)NCBICelera
Cytogenetic Map8C3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:18799693  


Genomics

Position Markers
AI852433  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38885,057,058 - 85,057,206UniSTSGRCm38
MGSCv37887,580,957 - 87,581,105UniSTSGRCm37
Celera889,351,814 - 89,351,963UniSTS
Cytogenetic Map8C3UniSTS
Whitehead/MRC_RH8996.48UniSTS
AI464345  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38885,057,373 - 85,057,456UniSTSGRCm38
MGSCv37887,581,272 - 87,581,355UniSTSGRCm37
Celera889,352,130 - 89,352,213UniSTS
Cytogenetic Map8C3UniSTS
Whitehead/MRC_RH81007.45UniSTS
UniSTS:235947  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38885,062,114 - 85,062,314UniSTSGRCm38
MGSCv37887,586,013 - 87,586,213UniSTSGRCm37
Celera889,356,864 - 89,357,065UniSTS
Cytogenetic Map8C3UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832016544117238700Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined834642776114837007Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83616300092728652Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837400000109600000Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)83970925694689598Mouse
14700686Civq3_mcerebral infarct volume QTL 3 (mouse)85188219185882191Mouse
1301506Aevm1_mautoimmune extremity vasculitis in MRL mice 1 (mouse)Not determined85428781788287993Mouse
1301952Im3_mimmunoregulatory 3 (mouse)Not determined85470661488706763Mouse
10412287Carg3_mCandida albicans resistance gene 3 (mouse)Not determined85554502889545028Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85820147992201479Mouse
10043975Obq31_mobesity QTL 31 (mouse)Not determined85840977692409776Mouse
1301688Orch6_mautoimmune orchitis resistance 6 (mouse)Not determined86078685094786976Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6346010797460107Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86393954797939696Mouse
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined86535776899357920Mouse
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined86560020799600347Mouse
1301767Fcsa2_mfemoral cross-sectional area 2 (mouse)Not determined870305375104305495Mouse
4142283Imraq2_mimmune response to AAV2 QTL 2 (mouse)Not determined870305375104305495Mouse
1558780Idd22_minsulin dependent diabetes susceptibility 22 (mouse)Not determined871102903105103009Mouse
4141395Char2a_mP. chabaudi malaria resistance QTL 2a (mouse)Not determined7113678390202598Mouse
4142023W3q5_mweight 3 weeks QTL 5 (mouse)Not determined71287817123895615Mouse
1357708Orq1_movulation rate QTL 1 (mouse)Not determined871287817123895615Mouse
1301872Cd4ts3_mCD4 T cell subset 3 (mouse)Not determined871396181105396393Mouse
1300920Pitm3_mprion incubation time 3 (mouse)Not determined873202495107202598Mouse
27095912Pglq14_mpelvic girdle length QTL 14, 16 week (mouse)873400000126100000Mouse
1558890Lith18_mlithogenic gene 18 (mouse)Not determined875675517109675623Mouse
1357470Obq16_mobesity QTL 16 (mouse)Not determined875685348109685497Mouse
1301808Nhdlq1_mnon-HDL QTL 1 (mouse)Not determined875685348109685497Mouse
1301874Hdlq16_mHDL QTL 16 (mouse)Not determined875685348109685497Mouse
10412234Nhdlq14_mnon-HDL QTL 14 (mouse)Not determined875685348109685497Mouse
1301099Cbm2_mcerebellum weight 2 (mouse)Not determined878518613112518703Mouse
1301581Char2_mP. chabaudi malaria resistance QTL 2 (mouse)Not determined879082178113082403Mouse
12904012Cfq10_mconditioned fear QTL 10 (mouse)88006677589014359Mouse
10755530Wbc2_mwhite blood cell count 2 (mouse)881092664115092664Mouse
10755519Wbc1_mwhite blood cell count 1 (mouse)881619151115619151Mouse
1301766Desp1_mdespair 1 (mouse)Not determined884759576118759741Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:315
Count of miRNA genes:175
Interacting mature miRNAs:191
Transcripts:ENSMUST00000125244, ENSMUST00000156084
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000125244
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl885,053,160 - 85,060,460 (-)Ensembl
RefSeq Acc Id: ENSMUST00000156084
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl885,053,189 - 85,060,443 (-)Ensembl
RefSeq Acc Id: NR_110581
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,779,789 - 85,787,089 (-)NCBI
GRCm38885,053,160 - 85,060,460 (-)NCBI
Celera889,347,911 - 89,355,210 (-)NCBI
Sequence:
RefSeq Acc Id: NR_110582
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,779,789 - 85,787,089 (-)NCBI
GRCm38885,053,160 - 85,060,460 (-)NCBI
Celera889,347,911 - 89,355,210 (-)NCBI
Sequence:
Protein Sequences
GenBank Protein EDL10990 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences

Promoters
RGD ID:8667739
Promoter ID:EPDNEW_M11901
Type:initiation region
Name:A230103J11Rik_1
Description:Mus musculus RIKEN cDNA A230103J11 gene , transcript variant1, long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38885,060,460 - 85,060,520EPDNEW
RGD ID:15093472
Promoter ID:EPDNEWNC_M1386
Type:multiple initiation site
Name:A230103J11Rik_1
Description:RIKEN cDNA A230103J11 gene [Source:MGISymbol;Acc:MGI:2444082]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38885,060,460 - 85,060,520EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000087026 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000125244 ENTREZGENE
  ENSMUST00000156084 ENTREZGENE
MGD MGI:2444082 ENTREZGENE
NCBI Gene 320466 ENTREZGENE
PhenoGen A230103J11Rik PhenoGen
RNAcentral URS000075C439 RNACentral
  URS000075CAA2 RNACentral
UniGene Mm.401371 ENTREZGENE