AY512915 (cDNA sequence AY512915) - Rat Genome Database
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Gene: AY512915 (cDNA sequence AY512915) Mus musculus
Analyze
Symbol: AY512915
Name: cDNA sequence AY512915
RGD ID: 1610440
MGI Page MGI
Description:
Type: ncrna
RefSeq Status: VALIDATED
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39695,267,555 - 95,310,974 (-)NCBIGRCm39mm39
GRCm39 Ensembl695,232,707 - 95,310,974 (-)Ensembl
GRCm38695,290,574 - 95,333,993 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl695,255,726 - 95,333,993 (-)EnsemblGRCm38mm10GRCm38
MGSCv37695,240,568 - 95,283,987 (-)NCBIGRCm37mm9NCBIm37
Celera697,180,006 - 97,223,341 (-)NCBICelera
Cytogenetic Map6D2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:10349636   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:14691545   PMID:16141072   PMID:16141073   PMID:24316575  


Genomics


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)61117500000Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396656149Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396656149Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396656149Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396656149Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645314059128835032Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46935985136423692Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648720000125360000Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648720000148450000Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648726556125356785Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652161713116155267Mouse
1301369Im4_mimmunoregulatory 4 (mouse)Not determined66348473897484905Mouse
1300650Bw18_mbody weight QTL 18 (mouse)Not determined666713869100714031Mouse
1301876Bits2_mbitterness sensitivity 2 (mouse)Not determined670425898104426034Mouse
1301813Skl3_mskeletal size (tail length) 3 (mouse)Not determined670425898104426034Mouse
1301034Egrm2_mearly growth rate (mouse)Not determined670425898104426034Mouse
1300869Stheal5_msoft tissue heal 5 (mouse)Not determined671575060105575178Mouse
1300954Fcsa1_mfemoral cross-sectional area 1 (mouse)Not determined671981024105981170Mouse
1301521Pas1c_mpulmonary adenoma susceptibility 1c (mouse)Not determined671981024105981170Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673500000134700000Mouse
1301320Ots1_movarian teratoma susceptibility 1 (mouse)Not determined675447583104503555Mouse
10043901Pfat5_mpredicted fat percentage 5 (mouse)Not determined675607306109607450Mouse
10412208Cypr4_mcytokine production 4 (mouse)Not determined675716503109716697Mouse
1357875Pfat2_mpredicted fat percentage 2 (mouse)Not determined676463949110464093Mouse
13824985Alh1_mamplitude of lateral head displacement 1 (mouse)67800000097000000Mouse
4141376Dbm1_mdiabetes modifier 1 (mouse)Not determined678629504121115387Mouse
14696731Pairq1_mP. aeruginosa infection resistance QTL 1 (mouse)681500000102200000Mouse
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683713869147052561Mouse
11251720Ewc4_methanol withdrawal and consumption 4 (mouse)684122513118122513Mouse
1301687Mnic2_mmacronutrient intake (mouse)Not determined686806805113544602Mouse
1301744Hdlq11_mHDL QTL 11 (mouse)Not determined687503360121503555Mouse
1301262Gasa3_mgastritis type A susceptibility locus 3 (mouse)Not determined689005405123005603Mouse
1301244Ichs_mimmediate cutaneous hypersensitivity QTL (mouse)Not determined690795610124795846Mouse
11532719Sluc45_msusceptibility to lung cancer 45 (mouse)69260730698258933Mouse
4141578Obrq1_mobesity resistance QTL 1 (mouse)Not determined92607306112004738Mouse
11353842Bmiq4_mbody mass index QTL 4 (mouse)692607306146429238Mouse
1301292Cfbw2_mcystic fibrosis body weight 2 (mouse)Not determined695004651129004738Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:349
Count of miRNA genes:290
Interacting mature miRNAs:315
Transcripts:ENSMUST00000089303, ENSMUST00000159751, ENSMUST00000159937, ENSMUST00000162315, ENSMUST00000171594
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000089303
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl695,276,694 - 95,333,978 (-)Ensembl
RefSeq Acc Id: ENSMUST00000159751
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl695,313,235 - 95,333,971 (-)Ensembl
RefSeq Acc Id: ENSMUST00000159937
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl695,290,577 - 95,333,993 (-)Ensembl
RefSeq Acc Id: ENSMUST00000162315
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl695,255,726 - 95,333,991 (-)Ensembl
RefSeq Acc Id: ENSMUST00000171594
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl695,327,437 - 95,333,977 (-)Ensembl
RefSeq Acc Id: NR_033559
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39695,267,555 - 95,310,974 (-)NCBI
GRCm38695,290,574 - 95,333,993 (-)ENTREZGENE
MGSCv37695,240,568 - 95,283,987 (-)RGD
Celera697,180,006 - 97,223,341 (-)RGD
cM Map6 ENTREZGENE
Sequence:
Protein Sequences
GenBank Protein AAR87786 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences

Promoters
RGD ID:6890500
Promoter ID:EPDNEW_M8701
Type:single initiation site
Name:AY512915_1
Description:Mus musculus cDNA sequence AY512915 , long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M8702  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38695,321,659 - 95,321,719EPDNEW
RGD ID:6890502
Promoter ID:EPDNEW_M8702
Type:single initiation site
Name:AY512915_2
Description:Mus musculus cDNA sequence AY512915 , long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M8701  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38695,333,993 - 95,334,053EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000068180 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000159937 ENTREZGENE
MGD MGI:3041245 ENTREZGENE
NCBI Gene 414067 ENTREZGENE
PhenoGen AY512915 PhenoGen
RNAcentral URS000075B890 RNACentral
UniProt Q6R5G7_MOUSE UniProtKB/TrEMBL