0610031O16Rik (RIKEN cDNA 0610031O16 gene) - Rat Genome Database

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Gene: 0610031O16Rik (RIKEN cDNA 0610031O16 gene) Mus musculus
Analyze
Symbol: 0610031O16Rik
Name: RIKEN cDNA 0610031O16 gene
RGD ID: 1610403
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: PREDICTED
Previously known as: hypothetical protein LOC68369
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393137,916,478 - 137,945,424 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3137,916,477 - 137,946,166 (-)EnsemblGRCm39 Ensembl
GRCm383138,210,717 - 138,239,663 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3138,210,716 - 138,240,405 (-)EnsemblGRCm38mm10GRCm38
Celera3144,615,772 - 144,644,750 (-)NCBICelera
Cytogenetic Map3G3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:16141072   PMID:16141073   PMID:24316575  


Genomics

Variants

.
Variants in 0610031O16Rik
962 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:291
Count of miRNA genes:247
Interacting mature miRNAs:268
Transcripts:ENSMUST00000183783, ENSMUST00000184166, ENSMUST00000185046, ENSMUST00000185122
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330067588147304689Mouse
1301705Sles3_msystemic lupus erythmatosus suppressor 3 (mouse)Not determined337174862143353183Mouse
27226732Tibmd3_mtibia midshaft diameter 3, 10 week (mouse)396607316147805636Mouse
1300752Ap6q_malcohol preference 6 QTL (mouse)Not determined3100372912147045722Mouse
27226733Tibmd6_mtibia midshaft diameter 6, 16 week (mouse)3101307316149805637Mouse
1302093Orgwq5_morgan weight QTL 5 (mouse)Not determined3107376936147304689Mouse
1300619Cdcs1_mcytokine deficiency colitis susceptibility 1 (mouse)Not determined3109834882143835005Mouse
1301381Bomb1_mbone marrow pre-B 1 (mouse)Not determined3111133243145133417Mouse
1301100Bdt2_mbone density traits 2 (mouse)Not determined3114736617148736784Mouse
10043919Afpq8_mabdominal fat percent QTL 8 (mouse)Not determined3119057332153057456Mouse
1558868Ses9_msalmonella enteritidis susceptibility 9 (mouse)Not determined3119057332153057456Mouse
4141935Tgq15_mtriglyceride QTL 15 (mouse)Not determined119318586153318586Mouse
4142449Tgq14_mtriglyceride QTL 14 (mouse)Not determined119318586153318586Mouse
1302151Lprm2_mlymphoproliferation modifier 2 (mouse)Not determined3119778857153779044Mouse
10412240Alpq6_malcohol preference QTL 6 (mouse)Not determined3120772078154772078Mouse
4142245Pstc1_mperiosteal circumference 1 (mouse)Not determined3126270248159745316Mouse
1301218Letohc1_mlow ethanol consumption 1 (mouse)Not determined3126352986159745316Mouse
1301347Fpli_mfasting plasma insulin (mouse)Not determined3126460514159745316Mouse
1301563Alcp3_malcohol preference locus 3 (mouse)Not determined3130736935159745316Mouse
11039523Tbbr1_mTrypanosoma brucei brucei response 1 (mouse)3130849375159745316Mouse
1300753Eae10_msusceptibility to experimental allergic encephalomyelitis 10 (mouse)Not determined3131736617148451178Mouse
10412120Ccs3_mcolon cancer susceptibility 3 (mouse)Not determined3131754536146017669Mouse
1301528Loco1_mlocomotor activity 1 (mouse)Not determined3133461893159745316Mouse

Markers in Region
AI325182  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm383138,231,207 - 138,231,335UniSTSGRCm38
MGSCv373137,894,171 - 137,894,299UniSTSGRCm37
Celera3144,636,254 - 144,636,382UniSTS
Cytogenetic Map3G3UniSTS
cM Map371.2UniSTS
Whitehead/MRC_RH31539.3UniSTS
RH127235  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm383138,212,167 - 138,212,373UniSTSGRCm38
MGSCv373137,875,131 - 137,875,337UniSTSGRCm37
Celera3144,617,222 - 144,617,428UniSTS
cM Map3 UniSTS
Whitehead/MRC_RH31538.21UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000183783
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3137,923,554 - 137,945,424 (-)Ensembl
GRCm38.p6 Ensembl3138,217,793 - 138,239,663 (-)Ensembl
RefSeq Acc Id: ENSMUST00000184166
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3137,932,321 - 137,945,440 (-)Ensembl
GRCm38.p6 Ensembl3138,226,560 - 138,239,679 (-)Ensembl
RefSeq Acc Id: ENSMUST00000185046
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3137,934,829 - 137,946,166 (-)Ensembl
GRCm38.p6 Ensembl3138,229,068 - 138,240,405 (-)Ensembl
RefSeq Acc Id: ENSMUST00000185122
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3137,916,477 - 137,945,424 (-)Ensembl
GRCm38.p6 Ensembl3138,210,716 - 138,239,663 (-)Ensembl
RefSeq Acc Id: NR_045760
RefSeq Status: PREDICTED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393137,916,478 - 137,945,424 (-)NCBI
GRCm383138,210,717 - 138,239,663 (-)ENTREZGENE
Celera3144,615,772 - 144,644,750 (-)ENTREZGENE
cM Map3 ENTREZGENE
Sequence:
Promoters
RGD ID:15092630
Promoter ID:EPDNEWNC_M550
Type:multiple initiation site
Name:0610031O16Rik_1
Description:RIKEN cDNA 0610031O16 gene [Source:MGISymbol;Acc:MGI:1915619]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm383138,239,679 - 138,239,739EPDNEWNC
RGD ID:6882478
Promoter ID:EPDNEW_M4690
Type:multiple initiation site
Name:0610031O16Rik_1
Description:Mus musculus RIKEN cDNA 0610031O16 gene , long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm383138,239,679 - 138,239,739EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000099146 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000185122 ENTREZGENE
MGD MGI:1915619 ENTREZGENE
NCBI Gene 68369 ENTREZGENE
PhenoGen 0610031O16Rik PhenoGen
RNAcentral URS000075EF8E RNACentral