2310039L15Rik (RIKEN cDNA 2310039L15 gene) - Rat Genome Database

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Gene: 2310039L15Rik (RIKEN cDNA 2310039L15 gene) Mus musculus
Analyze
Symbol: 2310039L15Rik
Name: RIKEN cDNA 2310039L15 gene
RGD ID: 1610393
MGI Page MGI
Description: Used to study Parkinson's disease 1.
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: A53T-syn; G2-3; hypothetical protein LOC69629; PrPsynA53T; Tg(Prnp-SNCA*A53T)23Mkle
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391095,172,138 - 95,199,078 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1095,172,138 - 95,202,064 (+)EnsemblGRCm39 Ensembl
GRCm381095,336,276 - 95,363,216 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1095,336,276 - 95,366,202 (+)EnsemblGRCm38mm10GRCm38
Celera1097,311,151 - 97,338,005 (+)NCBICelera
Cytogenetic Map10C2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12084935   PMID:12466851   PMID:12846986   PMID:14610273   PMID:15317865   PMID:15684072   PMID:15840579   PMID:16141072  
PMID:16141073   PMID:16230020   PMID:16399671   PMID:16597723   PMID:17254569   PMID:17316906   PMID:18799693   PMID:19119233   PMID:20185556   PMID:21304957   PMID:21499257   PMID:22357653  
PMID:22399753   PMID:22836259   PMID:24316575   PMID:24829096   PMID:26569394   PMID:27178361   PMID:27348587   PMID:29203207   PMID:29249285   PMID:29703245   PMID:29892066   PMID:30481502  
PMID:30481547   PMID:30659012   PMID:30842285   PMID:30877431   PMID:31036561   PMID:31231206   PMID:31237944   PMID:32024799   PMID:33296726   PMID:33926043   PMID:34172566   PMID:34211366  
PMID:34644545   PMID:34966254   PMID:35172141   PMID:35316276   PMID:35346306   PMID:36230952   PMID:36629784   PMID:36647152   PMID:37542299  


Genomics

Variants

.
Variants in 2310039L15Rik
931 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357740Obsty3_mobesity 3 (mouse)Not determined108235478116190980Mouse
1302067Scc9_mcolon tumor susceptibility 9 (mouse)Not determined1018259333125575232Mouse
27226772Tibl13_mtibia length 13, 10 week (mouse)1018875748129635869Mouse
1558757Eae34_mexperimental allergic encephalomyelitis susceptibility 34 (mouse)Not determined1021408154114217230Mouse
26884426Cvht1_mcranial vault height 1, 5 week (mouse)1024675898121035905Mouse
27095911Pglq15_mpelvic girdle length QTL 15, 16 week (mouse)1039175996129635869Mouse
27226764Tibl19_mtibia length 19, 16 week (mouse)1039175996129635869Mouse
26884411Bzwq8_mbi-zygomatic width QTL 8, 10 week (mouse)1044876096115935905Mouse
26884407Bzwq14_mbi-zygomatic width QTL 14, 16 wee (mouse)1045476096120635905Mouse
26884450Sklq15_mskull length QTL 15, 16 week (mouse)1059335822122335905Mouse
13208560Wght9_mweight 9 (mouse)1059835822120835905Mouse
26884424Zlq9_mzygomatic length QTL 9, 16 week (mouse)1063935779115935905Mouse
1302060El3_mepilepsy 3 (mouse)Not determined106549093899491121Mouse
1300533Aem3_manti-erythrocyte autoantibody modifier 3 (mouse)Not determined106549093899491121Mouse
1301737Insq9_minsulin QTL 9 (mouse)Not determined106549093899491121Mouse
26884447Sklq9_mskull length QTL 9, 10 week (mouse)1067335830111735905Mouse
26884430Zlq5_mzygomatic length QTL 5, 10 week (mouse)1067835830124835905Mouse
26884405Huml2_mhumerus length 2, 5 week (mouse)1069735830130430862Mouse
11039497Ltpr5a_mLeishmania tropica response 5a (mouse)1073506901107507047Mouse
11353832Pcholq4_mplasma cholesterol QTL 4 (mouse)1073987216125515907Mouse
11353843Gluq1_mblood glucose QTL 1 (mouse)1073987216125515907Mouse
1357632Vtbt9_mvertebral trabecular bone trait 9 (mouse)Not determined1075338568109338767Mouse
4142137Femwf3_mfemur work to failure 3 (mouse)Not determined75338568109338767Mouse
1300975Fembrs3_mfemur breaking strength 3 (mouse)Not determined1075338568109338767Mouse
11251717Siim1_mstress induced immobility 1 (mouse)1078381268112381268Mouse
14747004Mancz8_mmandible centroid size 8 (mouse)1082078412116078412Mouse
11059554Lmr32e_mleishmaniasis resistance 32e (mouse)1082309418116309657Mouse
11059555Lmr32f_mleishmaniasis resistance 32f (mouse)1082309418116309657Mouse
11059550Lmr32a_mleishmaniasis resistance 32a (mouse)1082309418116309657Mouse
11059551Lmr32b_mleishmaniasis resistance 32b (mouse)1082309418116309657Mouse
11059553Lmr32d_mleishmaniasis resistance 32d (mouse)1082309418116309657Mouse
1301165Lith7_mlithogenic gene 7 (mouse)Not determined1082309418116309657Mouse
10043881Adip24_madiposity 24 (mouse)Not determined1082392803116392952Mouse
4141054mwfh_mmodifier of white forlock hypopigmentation (mouse)Not determined83017003117017136Mouse
1357594Estoq3_membryo survival total QTL 3 (mouse)Not determined1084079650122041528Mouse
1357622Espq3_membryo survival preimplantation QTL 3 (mouse)Not determined1084079650122041528Mouse
4141479W10q8_mweight 10 weeks QTL 8 (mouse)Not determined84079650122041528Mouse
4142496W6q8_mweight 6 weeks QTL 8 (mouse)Not determined84079650122041528Mouse
4141387Lgaq5_mlate growth adjusted QTL 5 (mouse)Not determined84079650122041528Mouse
4142365Egq9_mearly growth QTL 9 (mouse)Not determined84079650122041528Mouse
1357779Tesq3_mtestis weight QTL 3 (mouse)Not determined1084079650122041528Mouse
1357638Cia29_mcollagen induced arthritis 29 (mouse)Not determined1085454982118497353Mouse
1300797Sluc22_msusceptibility to lung cancer 22 (mouse)Not determined1086713608120713756Mouse
1300908Insq4_minsulin QTL 4 (mouse)Not determined1086909085120909229Mouse
1301520Uvbi1_mUVB induced immunosuppression 1 (mouse)Not determined1086909085120909229Mouse
1357831Igf1sl2_mIGF-1 serum levels 2 (mouse)Not determined108769412799936278Mouse
1300921Skl4_mskeletal size (tail length) 4 (mouse)Not determined1088088254122088391Mouse
4142386Tgq20_mtriglyceride QTL 20 (mouse)Not determined88836456122836456Mouse
1301758Fcsa3_mfemoral cross-sectional area 3 (mouse)Not determined1089927651123927754Mouse
11039516Ltpr5_mLeishmania tropica response 5 (mouse)1090506901125575232Mouse
13208554Lgth11_mbody length 11 (mouse)1090835862120835905Mouse
1302162Ednrbm1_mendothelin receptor type B modifier 1 (mouse)Not determined1092127383103713756Mouse
12910821Ogrq4_moverall growth rate QTL 4 (mouse)1092169056107319989Mouse
4142074Tmevp2_mTheiler's murine encephalomyelitis virus persistence 2 (mouse)Not determined92729941111568319Mouse

Markers in Region
G36981  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381095,358,057 - 95,358,233UniSTSGRCm38
MGSCv371094,820,691 - 94,820,867UniSTSGRCm37
Celera1097,332,846 - 97,333,022UniSTS
Cytogenetic Map10C2UniSTS
cM Map1052.0UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000185313
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1095,172,138 - 95,199,078 (+)Ensembl
GRCm38.p6 Ensembl1095,336,276 - 95,363,216 (+)Ensembl
RefSeq Acc Id: ENSMUST00000219492
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1095,197,460 - 95,202,064 (+)Ensembl
GRCm38.p6 Ensembl1095,361,598 - 95,366,202 (+)Ensembl
RefSeq Acc Id: ENSMUST00000220058
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1095,190,750 - 95,199,071 (+)Ensembl
GRCm38.p6 Ensembl1095,354,888 - 95,363,209 (+)Ensembl
RefSeq Acc Id: NR_045337
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391095,172,138 - 95,199,078 (+)NCBI
GRCm381095,336,276 - 95,363,216 (+)ENTREZGENE
Celera1097,311,151 - 97,338,005 (+)ENTREZGENE
cM Map10 ENTREZGENE
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000100550 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000185313 ENTREZGENE
MGD MGI:1916879 ENTREZGENE
NCBI Gene 69629 ENTREZGENE
PhenoGen 2310039L15Rik PhenoGen
RNAcentral URS0000759F12 RNACentral