4921518K17Rik (RIKEN cDNA 4921518K17 gene) - Rat Genome Database

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Gene: 4921518K17Rik (RIKEN cDNA 4921518K17 gene) Mus musculus
Analyze
Symbol: 4921518K17Rik
Name: RIKEN cDNA 4921518K17 gene
RGD ID: 1610135
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC78758; uncharacterized protein LOC78758
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391257,632,761 - 57,665,388 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1257,632,761 - 57,665,388 (-)EnsemblGRCm39 Ensembl
GRCm381257,585,975 - 57,618,602 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1257,585,975 - 57,618,602 (-)EnsemblGRCm38mm10GRCm38
Celera1258,767,091 - 58,771,674 (-)NCBICelera
Cytogenetic Map12C1NCBI
cM Map1224.7NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:24316575  


Genomics

Variants

.
Variants in 4921518K17Rik
1078 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:94
Count of miRNA genes:90
Interacting mature miRNAs:91
Transcripts:ENSMUST00000143949
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142234Tmc1m3_mTmc1 modifier 3 (mouse)Not determined12541844077031203Mouse
27226753Femd7_mfemur midshaft diameter 7, 10 week (mouse)12955000084146774Mouse
13207568Tcq14_mtotal cholesterol QTL 14 (mouse)121166000197176774Mouse
1558978Cplaq10_mcircadian period of locomotor activity 10 (mouse)Not determined121534102679040364Mouse
1301574Lmblgq5_mlimb length QTL 5 (mouse)Not determined121759644780956883Mouse
1301989Hdlq18_mHDL QTL 18 (mouse)Not determined122916068563160884Mouse
1300636Gct2_mgranulosa cell tumorigenesis 2 (mouse)Not determined122916068563160884Mouse
4141843Moen3_mmodifier of engrailed QTL 3 (mouse)Not determined122980158463801733Mouse
14747008Mancz10_mmandible centroid size 10 (mouse)122986352263863522Mouse
10402492Dipa8_mdrug induced psychomotor activation 8 (mouse)Not determined123493387268934019Mouse
1300818Bbaa10_mB.burgdorferi-associated arthritis 10 (mouse)Not determined123509100465511019Mouse
4142002Tbqt3_mtibia bone quality traits 3 (mouse)Not determined1235285496109936243Mouse
1357479Splwt1_mspleen weight 1 (mouse)Not determined124169317590887526Mouse
1357757Lnopy2_mlens opacity 2 (mouse)Not determined125284662686846796Mouse
1357749Vtbt13_mvertebral trabecular bone trait 13 (mouse)Not determined125313200287132145Mouse
12832727Ahrq1_mairway hyperresponsiveness QTL 1 (mouse)125469591082665939Mouse
12903999Opfaq8_mopen field activity QTL 8 (mouse)125490765357870585Mouse
13504832Bacszq2_mbaculum size QTL 2 (mouse)125694579875345787Mouse


Expression


Sequence


RefSeq Acc Id: ENSMUST00000143949
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1257,632,761 - 57,665,388 (-)Ensembl
GRCm38.p6 Ensembl1257,585,975 - 57,618,602 (-)Ensembl
RefSeq Acc Id: NR_131110
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391257,632,761 - 57,665,388 (-)NCBI
GRCm381257,585,975 - 57,618,602 (-)NCBI
Sequence:
Promoters
RGD ID:8678330
Promoter ID:EPDNEW_M17196
Type:single initiation site
Name:4921518K17Rik_1
Description:Mus musculus RIKEN cDNA 4921518K17 gene , long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381257,616,520 - 57,616,580EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000085851 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000143949 ENTREZGENE
MGD MGI:1926008 ENTREZGENE
NCBI Gene 78758 ENTREZGENE
PhenoGen 4921518K17Rik PhenoGen
RNAcentral URS0000783978 RNACentral