Vmn1r44 (vomeronasal 1 receptor 44) - Rat Genome Database
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Gene: Vmn1r44 (vomeronasal 1 receptor 44) Mus musculus
Analyze
No known orthologs.
Symbol: Vmn1r44
Name: vomeronasal 1 receptor 44
RGD ID: 1609979
MGI Page MGI
Description: Orthologous to several human genes including VN1R17P (vomeronasal 1 receptor 17 pseudogene); INTERACTS WITH 4,4'-diaminodiphenylmethane.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: V1r; V1RA10; V1rb11; V1rb4; vomernasal 1 receptor Vmn1r44; vomeronasal 1 receptor, B4; vomeronasal receptor 1 A10; vomeronasal receptor V1RB11; vomeronasal type-1 receptor 44; vomeronasal type-1 receptor A10; vomeronasal type-1 receptor B11; vomeronasal type-1 receptor B4
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39689,869,126 - 89,871,188 (+)NCBIGRCm39mm39
GRCm39 Ensembl689,860,642 - 89,871,870 (+)Ensembl
GRCm38689,892,144 - 89,894,206 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl689,883,660 - 89,894,888 (+)EnsemblGRCm38mm10GRCm38
MGSCv37689,843,268 - 89,844,200 (+)NCBIGRCm37mm9NCBIm37
MGSCv36689,843,268 - 89,844,200 (+)NCBImm8
Celera691,801,211 - 91,802,143 (+)NCBICelera
Cytogenetic Map6D1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
1. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11116090   PMID:11802169   PMID:12214233   PMID:12466851   PMID:12477932   PMID:15489334   PMID:19952141   PMID:20003482   PMID:21873635  


Genomics

Position Markers
UniSTS:493163  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38690,223,408 - 90,224,340UniSTSGRCm38
GRCm38689,893,274 - 89,894,206UniSTSGRCm38
MGSCv37690,173,402 - 90,174,334UniSTSGRCm37
MGSCv37689,843,268 - 89,844,200UniSTSGRCm37
Celera691,801,211 - 91,802,143UniSTS
Celera692,112,709 - 92,113,641UniSTS
Cytogenetic Map6D1UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)61117500000Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396656149Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396656149Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396656149Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396656149Mouse
1558984Cplaq9_mcircadian period of locomotor activity 9 (mouse)Not determined63866962592607450Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645314059128835032Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46935985136423692Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648720000125360000Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648720000148450000Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648726556125356785Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652161713116155267Mouse
15039373Adip28_madiposity 28 (mouse)65630821190308211Mouse
15039375Bw41_mbody weight QTL 41 (mouse)65630821190308211Mouse
1558977Skmw10_mskeletal muscle weight 10 (mouse)Not determined65844758392447710Mouse
10043972Obq28_mobesity QTL 28 (mouse)Not determined65854043392540433Mouse
1301740Bwq2_mbody weight QTL 2 (mouse)Not determined66005768094057799Mouse
1301369Im4_mimmunoregulatory 4 (mouse)Not determined66348473897484905Mouse
1300650Bw18_mbody weight QTL 18 (mouse)Not determined666713869100714031Mouse
1301876Bits2_mbitterness sensitivity 2 (mouse)Not determined670425898104426034Mouse
1301813Skl3_mskeletal size (tail length) 3 (mouse)Not determined670425898104426034Mouse
1301034Egrm2_mearly growth rate (mouse)Not determined670425898104426034Mouse
1302020Bbaa20_mB.burgdorferi-associated arthritis 20 (mouse)Not determined67132262193464093Mouse
1300869Stheal5_msoft tissue heal 5 (mouse)Not determined671575060105575178Mouse
1300954Fcsa1_mfemoral cross-sectional area 1 (mouse)Not determined671981024105981170Mouse
1301521Pas1c_mpulmonary adenoma susceptibility 1c (mouse)Not determined671981024105981170Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673500000134700000Mouse
1301320Ots1_movarian teratoma susceptibility 1 (mouse)Not determined675447583104503555Mouse
1301571Arrd1_mage-related retinal degeneration 1 (mouse)Not determined67554435692607450Mouse
1300674Nidd3n_mnon-insulin-dependent diabetes mellitus 3 in NSY (mouse)Not determined67554435694225955Mouse
10412195Efw_mepididymal fat weight (mouse)Not determined67554435694225955Mouse
10043901Pfat5_mpredicted fat percentage 5 (mouse)Not determined675607306109607450Mouse
10412208Cypr4_mcytokine production 4 (mouse)Not determined675716503109716697Mouse
1357875Pfat2_mpredicted fat percentage 2 (mouse)Not determined676463949110464093Mouse
14697704Stsl4_mSalmonella typhimurium susceptibility locus 4 (mouse)67710000090000000Mouse
13824985Alh1_mamplitude of lateral head displacement 1 (mouse)67800000097000000Mouse
4141376Dbm1_mdiabetes modifier 1 (mouse)Not determined678629504121115387Mouse
14696731Pairq1_mP. aeruginosa infection resistance QTL 1 (mouse)681500000102200000Mouse
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683713869147052561Mouse
11251720Ewc4_methanol withdrawal and consumption 4 (mouse)684122513118122513Mouse
1301687Mnic2_mmacronutrient intake (mouse)Not determined686806805113544602Mouse
1301744Hdlq11_mHDL QTL 11 (mouse)Not determined687503360121503555Mouse
1301262Gasa3_mgastritis type A susceptibility locus 3 (mouse)Not determined689005405123005603Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:46
Count of miRNA genes:46
Interacting mature miRNAs:46
Transcripts:ENSMUST00000089420
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000089420   ⟹   ENSMUSP00000100706
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl689,893,177 - 89,894,284 (+)Ensembl
RefSeq Acc Id: ENSMUST00000204656   ⟹   ENSMUSP00000145135
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl689,883,660 - 89,894,888 (+)Ensembl
RefSeq Acc Id: ENSMUST00000226120   ⟹   ENSMUSP00000154014
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl689,883,660 - 89,894,888 (+)Ensembl
RefSeq Acc Id: ENSMUST00000226171   ⟹   ENSMUSP00000154711
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl689,886,677 - 89,894,888 (+)Ensembl
RefSeq Acc Id: ENSMUST00000226345   ⟹   ENSMUSP00000154318
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl689,883,660 - 89,894,888 (+)Ensembl
RefSeq Acc Id: ENSMUST00000226760   ⟹   ENSMUSP00000154174
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl689,886,677 - 89,894,888 (+)Ensembl
RefSeq Acc Id: ENSMUST00000227047   ⟹   ENSMUSP00000153999
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl689,883,660 - 89,894,888 (+)Ensembl
RefSeq Acc Id: ENSMUST00000227456   ⟹   ENSMUSP00000153772
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl689,883,660 - 89,894,888 (+)Ensembl
RefSeq Acc Id: ENSMUST00000227625   ⟹   ENSMUSP00000154294
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl689,883,660 - 89,894,888 (+)Ensembl
RefSeq Acc Id: ENSMUST00000227747   ⟹   ENSMUSP00000154656
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl689,886,677 - 89,894,888 (+)Ensembl
RefSeq Acc Id: ENSMUST00000227888   ⟹   ENSMUSP00000153985
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl689,883,660 - 89,894,888 (+)Ensembl
RefSeq Acc Id: ENSMUST00000228183   ⟹   ENSMUSP00000154163
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl689,883,660 - 89,894,888 (+)Ensembl
RefSeq Acc Id: ENSMUST00000228700   ⟹   ENSMUSP00000154809
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl689,886,677 - 89,894,888 (+)Ensembl
RefSeq Acc Id: NM_053227   ⟹   NP_444457
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39689,870,256 - 89,871,188 (+)NCBI
GRCm38689,893,274 - 89,894,206 (+)NCBI
MGSCv37689,843,268 - 89,844,200 (+)RGD
Celera691,801,211 - 91,802,143 (+)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006505380   ⟹   XP_006505443
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39689,869,126 - 89,871,188 (+)NCBI
GRCm38689,892,144 - 89,894,206 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_444457   ⟸   NM_053227
- UniProtKB: Q9EQ47 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006505443   ⟸   XM_006505380
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSMUSP00000145135   ⟸   ENSMUST00000204656
RefSeq Acc Id: ENSMUSP00000154163   ⟸   ENSMUST00000228183
RefSeq Acc Id: ENSMUSP00000154294   ⟸   ENSMUST00000227625
RefSeq Acc Id: ENSMUSP00000153985   ⟸   ENSMUST00000227888
RefSeq Acc Id: ENSMUSP00000154656   ⟸   ENSMUST00000227747
RefSeq Acc Id: ENSMUSP00000153772   ⟸   ENSMUST00000227456
RefSeq Acc Id: ENSMUSP00000100706   ⟸   ENSMUST00000089420
RefSeq Acc Id: ENSMUSP00000153999   ⟸   ENSMUST00000227047
RefSeq Acc Id: ENSMUSP00000154318   ⟸   ENSMUST00000226345
RefSeq Acc Id: ENSMUSP00000154014   ⟸   ENSMUST00000226120
RefSeq Acc Id: ENSMUSP00000154711   ⟸   ENSMUST00000226171
RefSeq Acc Id: ENSMUSP00000154174   ⟸   ENSMUST00000226760
RefSeq Acc Id: ENSMUSP00000154809   ⟸   ENSMUST00000228700


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2148517 AgrOrtholog
Ensembl Genes ENSMUSG00000068234 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000100706 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000145135 UniProtKB/Swiss-Prot
  ENSMUSP00000153772 UniProtKB/Swiss-Prot
  ENSMUSP00000153985 UniProtKB/TrEMBL
  ENSMUSP00000153999 UniProtKB/Swiss-Prot
  ENSMUSP00000154014 UniProtKB/TrEMBL
  ENSMUSP00000154163 UniProtKB/TrEMBL
  ENSMUSP00000154174 UniProtKB/Swiss-Prot
  ENSMUSP00000154294 UniProtKB/TrEMBL
  ENSMUSP00000154318 UniProtKB/Swiss-Prot
  ENSMUSP00000154656 UniProtKB/TrEMBL
  ENSMUSP00000154711 UniProtKB/TrEMBL
  ENSMUSP00000154809 UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000089420 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000204656 UniProtKB/Swiss-Prot
  ENSMUST00000226120 UniProtKB/TrEMBL
  ENSMUST00000226171 UniProtKB/TrEMBL
  ENSMUST00000226345 UniProtKB/Swiss-Prot
  ENSMUST00000226760 UniProtKB/Swiss-Prot
  ENSMUST00000227047 UniProtKB/Swiss-Prot
  ENSMUST00000227456 UniProtKB/Swiss-Prot
  ENSMUST00000227625 UniProtKB/TrEMBL
  ENSMUST00000227747 UniProtKB/TrEMBL
  ENSMUST00000227888 UniProtKB/TrEMBL
  ENSMUST00000228183 UniProtKB/TrEMBL
  ENSMUST00000228700 UniProtKB/Swiss-Prot
InterPro GPCR_Rhodpsn_7TM UniProtKB/Swiss-Prot
  Vmron_rcpt_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:113854 UniProtKB/Swiss-Prot
MGD MGI:2148517 ENTREZGENE
NCBI Gene 113854 ENTREZGENE
PANTHER PTHR24062 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam V1R UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Vmn1r44 PhenoGen
PRINTS VOMERONASL1R UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_2 UniProtKB/Swiss-Prot
UniProt A0A2I3BRN9_MOUSE UniProtKB/TrEMBL
  Q9EQ47 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary B9EKS6 UniProtKB/Swiss-Prot
  Q3B815 UniProtKB/Swiss-Prot
  Q3B816 UniProtKB/Swiss-Prot
  Q8R2E5 UniProtKB/Swiss-Prot
  Q8VIC5 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 Vmn1r44  vomeronasal 1 receptor 44  V1rb4  vomeronasal 1 receptor, B4  Symbol and/or name change 5135510 APPROVED