4932441J04Rik (RIKEN cDNA 4932441J04 gene) - Rat Genome Database

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Gene: 4932441J04Rik (RIKEN cDNA 4932441J04 gene) Mus musculus
Analyze
Symbol: 4932441J04Rik
Name: RIKEN cDNA 4932441J04 gene
RGD ID: 1609970
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: PREDICTED
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39557,727,426 - 57,875,261 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl557,727,424 - 57,877,543 (-)EnsemblGRCm39 Ensembl
GRCm38557,570,084 - 57,717,919 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl557,570,082 - 57,720,201 (-)EnsemblGRCm38mm10GRCm38
MGSCv37557,961,323 - 58,109,158 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera554,940,205 - 55,089,043 (-)NCBICelera
Cytogenetic Map5C1NCBI
cM Map531.11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073  


Genomics

Variants

.
Variants in 4932441J04Rik
4812 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:51
Count of miRNA genes:51
Interacting mature miRNAs:51
Transcripts:ENSMUST00000180708
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301693Sle6_msystemic lupus erythematosus susceptibility 6 (mouse)Not determined5889069387841837Mouse
11537367Hmtb11_mhemostasis and thrombosis 11 (mouse)52210082364806579Mouse
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526441234138455402Mouse
1300701Cd8ts1_mCD8 T cell subset 1 (mouse)Not determined52721534861215451Mouse
1301555Alcp10_malcohol preference locus 10 (mouse)Not determined53102427565024480Mouse
1301403Alcp9_malcohol preference locus 9 (mouse)Not determined53102427565024480Mouse
11353827Hplq1_mhot plate latency 1 (mouse)53157045865570458Mouse
4140990Lgq6_mlate growth QTL 6 (mouse)Not determined32133234100777931Mouse
4141219W10q16_mweight 10 weeks QTL 16 (mouse)Not determined32133234100777931Mouse
10043995Hbnr9_mHeligmosomoides bakeri nematode resistance 9 (mouse)Not determined53348866767488876Mouse
1301845Lxw4_mlupus BXSB x NZW 4 (mouse)Not determined53569446269694594Mouse
11049561Lmr24e_mleishmaniasis resistance 24e (mouse)53569446269694594Mouse
11049559Lmr24c_mleishmaniasis resistance 24c (mouse)53569446269694594Mouse
11049558Lmr24b_mleishmaniasis resistance 24b (mouse)53569446269694594Mouse
1301223Hdlq7_mHDL QTL 7 (mouse)Not determined53585456869854714Mouse
13464252Ahl10_mage related hearing loss, early onset 10 (mouse)53585456869854714Mouse
4141647Hrvhf1_mheart rate variability, high frequency 1 (mouse)Not determined3643342370433423Mouse
1301170Lith13_mlithogenic gene 13 (mouse)Not determined53649448670494598Mouse
1300926Hpi2_mhepatic PMN infiltration 2 (mouse)Not determined53758148864806579Mouse
1301524Lmb2_mlupus in MRL and B6 F2 cross (mouse)Not determined537581488112465722Mouse
13464246Ahl11_mage related hearing loss, early onset 11 (mouse)53764377771643896Mouse
1300951Gbvq1_mgallstone bladder volume QTL 1 (mouse)Not determined53811168172111798Mouse
13464245Ahl12_mage related hearing loss, early onset 12 (mouse)53811168172111798Mouse
1301698Pcfm4_mperiosteal circumference and femur length 4 (mouse)Not determined54458584378585965Mouse
13207584Mwmlpt4_mMorris water maze latency to platform, training, 4 (mouse)54632260680322606Mouse
13207588Mwmlpa4_mMorris water maze latency to platform, all, 4 (mouse)54632260680322606Mouse
14746981Manh57_mmandible shape 57 (mouse)54716974281169742Mouse
11041665Lmr24_mleishmaniasis resistance 24 (mouse)552694462107321041Mouse
11041899Lmr24a_mleishmaniasis resistance 24a (mouse)552694462107321041Mouse
4141473Lfnq1_mlung function QTL 1 (mouse)Not determined5441111064579648Mouse
4142064Tmc1m4_mTmc1 modifier 4 (mouse)Not determined554500177127001072Mouse
1301243Bmd2_mbone mineral density 2 (mouse)Not determined555388334100455525Mouse
4142317Rgcs1_mretinal ganglion cell susceptible 1 (mouse)Not determined55388334108762627Mouse
13464248Ahl13_mage related hearing loss, early onset 13 (mouse)55564587489645995Mouse
10043962Obq27_mobesity QTL 27 (mouse)Not determined55628565590285655Mouse

Markers in Region
C87115  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38557,611,878 - 57,612,126UniSTSGRCm38
MGSCv37558,003,117 - 58,003,365UniSTSGRCm37
Celera554,982,050 - 54,982,298UniSTS
Cytogenetic Map5C1UniSTS
Whitehead/MRC_RH5813.46UniSTS
D5Mit269  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38557,683,768 - 57,684,081UniSTSGRCm38
MGSCv37558,075,007 - 58,075,320UniSTSGRCm37
Celera555,053,296 - 55,053,611UniSTS
Cytogenetic Map5C1UniSTS
cM Map536.0UniSTS
Whitehead Genetic526.2UniSTS
Whitehead_YAC5 UniSTS
AU042386  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38557,608,773 - 57,608,901UniSTSGRCm38
MGSCv37558,000,012 - 58,000,140UniSTSGRCm37
Celera554,978,945 - 54,979,073UniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map2E3UniSTS
Whitehead/MRC_RH5812.93UniSTS
UniSTS:224170  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38557,645,534 - 57,645,646UniSTSGRCm38
MGSCv37558,036,773 - 58,036,885UniSTSGRCm37
Celera555,015,501 - 55,015,613UniSTS
Cytogenetic Map5C1UniSTS
PCDH7  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38557,718,306 - 57,718,502UniSTSGRCm38
MGSCv37558,109,545 - 58,109,741UniSTSGRCm37
Celera555,089,432 - 55,089,628UniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map5C3-DUniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000180708
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl557,727,424 - 57,875,262 (-)Ensembl
GRCm38.p6 Ensembl557,570,082 - 57,717,920 (-)Ensembl
RefSeq Acc Id: ENSMUST00000193156
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl557,873,482 - 57,877,543 (-)Ensembl
GRCm38.p6 Ensembl557,716,140 - 57,720,201 (-)Ensembl
RefSeq Acc Id: NR_015588
RefSeq Status: PREDICTED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39557,727,426 - 57,875,261 (-)NCBI
GRCm38557,570,084 - 57,717,919 (-)ENTREZGENE
MGSCv37557,961,323 - 58,109,158 (-)RGD
Celera554,940,205 - 55,089,043 (-)RGD
cM Map5 ENTREZGENE
Sequence:
Promoters
RGD ID:6886718
Promoter ID:EPDNEW_M6810
Type:single initiation site
Name:4932441J04Rik_1
Description:Mus musculus RIKEN cDNA 4932441J04 gene , long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M6811  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38557,616,952 - 57,617,012EPDNEW
RGD ID:6886720
Promoter ID:EPDNEW_M6811
Type:single initiation site
Name:4932441J04Rik_2
Description:Mus musculus RIKEN cDNA 4932441J04 gene , long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M6810  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38557,717,928 - 57,717,988EPDNEW
RGD ID:15092862
Promoter ID:EPDNEWNC_M768
Type:single initiation site
Name:4932441J04Rik_1
Description:RIKEN cDNA 4932441J04 gene [Source:MGISymbol;Acc:MGI:2441691]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38557,717,928 - 57,717,988EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000097216 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000180708 ENTREZGENE
MGD MGI:2441691 ENTREZGENE
NCBI Gene 319216 ENTREZGENE
PhenoGen 4932441J04Rik PhenoGen
RNAcentral URS000075BAB1 RNACentral