4933406B17Rik (RIKEN cDNA 4933406B17 gene) - Rat Genome Database

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Gene: 4933406B17Rik (RIKEN cDNA 4933406B17 gene) Mus musculus
Analyze
Symbol: 4933406B17Rik
Name: RIKEN cDNA 4933406B17 gene
RGD ID: 1609812
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: MODEL
Previously known as: Gm45852; hypothetical protein LOC71040; uncharacterized protein LOC71040
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39896,223,042 - 96,230,043 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl896,223,058 - 96,230,346 (+)EnsemblGRCm39 Ensembl
GRCm38895,496,414 - 95,503,409 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl895,496,430 - 95,503,718 (+)EnsemblGRCm38mm10GRCm38
MGSCv37898,020,347 - 98,024,848 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36898,020,347 - 98,024,848 (+)NCBIMGSCv36mm8
Celera899,811,191 - 99,818,111 (+)NCBICelera
Cytogenetic Map8D1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:14610273   PMID:16141072   PMID:16141073  


Genomics

Variants

.
Variants in 4933406B17Rik
211 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832506572117965439Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined835109930115563747Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837867154110326632Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6418673698186736Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86466617698666325Mouse
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined866084397100084549Mouse
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined866326836100326976Mouse
4142283Imraq2_mimmune response to AAV2 QTL 2 (mouse)Not determined871032003105032123Mouse
1301767Fcsa2_mfemoral cross-sectional area 2 (mouse)Not determined871032003105032123Mouse
1357708Orq1_movulation rate QTL 1 (mouse)Not determined871740461124622354Mouse
4142023W3q5_mweight 3 weeks QTL 5 (mouse)Not determined71740461124622354Mouse
1558780Idd22_minsulin dependent diabetes susceptibility 22 (mouse)Not determined871829531105829637Mouse
1301872Cd4ts3_mCD4 T cell subset 3 (mouse)Not determined872122809106123021Mouse
1300920Pitm3_mprion incubation time 3 (mouse)Not determined873929123107929226Mouse
27095912Pglq14_mpelvic girdle length QTL 14, 16 week (mouse)874126628126826739Mouse
1558890Lith18_mlithogenic gene 18 (mouse)Not determined876402145110402251Mouse
1357470Obq16_mobesity QTL 16 (mouse)Not determined876411976110412125Mouse
10412234Nhdlq14_mnon-HDL QTL 14 (mouse)Not determined876411976110412125Mouse
1301874Hdlq16_mHDL QTL 16 (mouse)Not determined876411976110412125Mouse
1301099Cbm2_mcerebellum weight 2 (mouse)Not determined879245241113245331Mouse
1301581Char2_mP. chabaudi malaria resistance QTL 2 (mouse)Not determined879808806113809031Mouse
10755530Wbc2_mwhite blood cell count 2 (mouse)881819296115819296Mouse
10755519Wbc1_mwhite blood cell count 1 (mouse)882345783116345783Mouse
1301766Desp1_mdespair 1 (mouse)Not determined885486208119486373Mouse
1302049Heal1_mwound healing/regeneration 1 (mouse)Not determined886443553120443701Mouse
1301253Skmw2_mskeletal muscle weight 2 (mouse)Not determined886443553120443701Mouse
10045619Heal14_mwound healing/regeneration 14 (mouse)Not determined886443553120443701Mouse
27226796Scvln16_msacral vertebrae length 2, 16 week (mouse)889726628130027694Mouse
14696809Rbcn3_mrod bipolar cell number 3 (mouse)895056628102856632Mouse


Expression


Sequence


RefSeq Acc Id: ENSMUST00000212602
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl896,223,058 - 96,230,346 (+)Ensembl
GRCm38.p6 Ensembl895,496,430 - 95,503,718 (+)Ensembl
RefSeq Acc Id: ENSMUST00000212927
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl896,223,075 - 96,227,576 (+)Ensembl
GRCm38.p6 Ensembl895,496,447 - 95,500,948 (+)Ensembl
RefSeq Acc Id: XR_004934975
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39896,223,609 - 96,227,764 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004934976
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39896,223,609 - 96,227,764 (+)NCBI
Sequence:
RefSeq Acc Id: XR_879116
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39896,223,609 - 96,227,764 (+)NCBI
GRCm38895,496,414 - 95,501,127 (+)NCBI
Sequence:
RefSeq Acc Id: XR_879117
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39896,223,042 - 96,227,764 (+)NCBI
GRCm38895,496,414 - 95,501,127 (+)NCBI
Sequence:
RefSeq Acc Id: XR_879118
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39896,223,609 - 96,230,043 (+)NCBI
GRCm38895,496,414 - 95,503,409 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000110427 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000212927 ENTREZGENE
MGD MGI:1918290 ENTREZGENE
NCBI Gene 71040 ENTREZGENE
PhenoGen 4933406B17Rik PhenoGen