1700125H03Rik (RIKEN cDNA 1700125H03 gene) - Rat Genome Database
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Gene: 1700125H03Rik (RIKEN cDNA 1700125H03 gene) Mus musculus
Analyze
Symbol: 1700125H03Rik
Name: RIKEN cDNA 1700125H03 gene
RGD ID: 1609763
MGI Page MGI
Description:
Type: ncrna
RefSeq Status: VALIDATED
Also known as: 4930510D22Rik; hypothetical protein LOC73609
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39868,821,111 - 68,828,362 (+)NCBIGRCm39mm39
GRCm38868,368,459 - 68,375,710 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl868,368,434 - 68,375,710 (+)EnsemblGRCm38mm10GRCm38
MGSCv37870,892,358 - 70,896,192 (+)NCBIGRCm37mm9NCBIm37
Celera870,913,423 - 70,917,199 (+)NCBICelera
Cytogenetic Map8B3.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:24316575  


Genomics

Position Markers
Csgalnact1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38868,373,548 - 68,373,712UniSTSGRCm38
Celera870,918,454 - 70,918,618UniSTS
Cytogenetic Map8B3.3UniSTS
cM Map833.88UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558870Eae36_mexperimental allergic encephalomyelitis susceptibility 36 (mouse)Not determined81472316071045600Mouse
1357811Orq3_movulation rate QTL 3 (mouse)Not determined83201654471287993Mouse
4141437W10q14_mweight 10 weeks QTL 14 (mouse)Not determined3201654471287993Mouse
4141172W6q9_mweight 6 weeks QTL 9 (mouse)Not determined3201654471287993Mouse
4140966Egq12_mearly growth QTL 12 (mouse)Not determined3201654471287993Mouse
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832016544117238700Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined834642776114837007Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83616300092728652Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837400000109600000Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)83970925694689598Mouse
1301544Iba3_minduction of brown adipocytes 3 (mouse)Not determined84429488078295025Mouse
1301717Adip4_madiposity 4 (mouse)Not determined84763703081637146Mouse
10766453Char11_mP. chabaudi malaria resistance QTL 11 (mouse)84763703081637146Mouse
1301441Skull11_mskull morphology 11 (mouse)Not determined84773713481737254Mouse
1357715Alaa3_malopecia areata 3 (mouse)Not determined84879293982793021Mouse
14746987Manh64_mmandible shape 64 (mouse)85005330684053306Mouse
14747005Mancz7_mmandible centroid size 7 (mouse)85005330684053306Mouse
14700686Civq3_mcerebral infarct volume QTL 3 (mouse)85188219185882191Mouse
1301506Aevm1_mautoimmune extremity vasculitis in MRL mice 1 (mouse)Not determined85428781788287993Mouse
1301952Im3_mimmunoregulatory 3 (mouse)Not determined85470661488706763Mouse
10412287Carg3_mCandida albicans resistance gene 3 (mouse)Not determined85554502889545028Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85820147992201479Mouse
10043975Obq31_mobesity QTL 31 (mouse)Not determined85840977692409776Mouse
1301688Orch6_mautoimmune orchitis resistance 6 (mouse)Not determined86078685094786976Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6346010797460107Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86393954797939696Mouse
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined86535776899357920Mouse
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined86560020799600347Mouse
10766466Char12_mP. chabaudi malaria resistance QTL 12 (mouse)86826982782600347Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:204
Count of miRNA genes:174
Interacting mature miRNAs:183
Transcripts:ENSMUST00000124929, ENSMUST00000139265
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000124929
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl868,368,434 - 68,372,293 (+)Ensembl
RefSeq Acc Id: ENSMUST00000139265
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl868,368,466 - 68,375,710 (+)Ensembl
RefSeq Acc Id: NR_038181
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39868,821,111 - 68,828,362 (+)NCBI
GRCm38868,368,459 - 68,375,710 (+)ENTREZGENE
Celera870,913,423 - 70,920,798 (+)ENTREZGENE
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_038189
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39868,821,111 - 68,824,945 (+)NCBI
GRCm38868,368,459 - 68,372,293 (+)NCBI
Celera870,913,423 - 70,920,798 (+)ENTREZGENE
cM Map8 ENTREZGENE
Sequence:
Promoters
RGD ID:8667209
Promoter ID:EPDNEW_M11635
Type:initiation region
Name:1700125H03Rik_1
Description:Mus musculus RIKEN cDNA 1700125H03 gene , transcript variant1, long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38868,368,466 - 68,368,526EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000085197 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000124929 ENTREZGENE
  ENSMUST00000139265 ENTREZGENE
MGD MGI:1920859 ENTREZGENE
NCBI Gene 73609 ENTREZGENE
PhenoGen 1700125H03Rik PhenoGen
RNAcentral URS000075A460 RNACentral
  URS000075EEDC RNACentral
UniGene Mm.443247 ENTREZGENE