4930519D14Rik (RIKEN cDNA 4930519D14 gene) - Rat Genome Database

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Gene: 4930519D14Rik (RIKEN cDNA 4930519D14 gene) Mus musculus
Analyze
Symbol: 4930519D14Rik
Name: RIKEN cDNA 4930519D14 gene
RGD ID: 1609169
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: PREDICTED
Previously known as: hypothetical protein LOC75090; uncharacterized protein LOC75090
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391330,799,026 - 30,808,241 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1330,799,026 - 30,808,242 (+)EnsemblGRCm39 Ensembl
GRCm381330,615,043 - 30,624,258 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1330,615,043 - 30,624,259 (+)EnsemblGRCm38mm10GRCm38
Celera1330,829,306 - 30,838,415 (+)NCBICelera
Cytogenetic Map13A3.2NCBI
cM Map1313.25NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:24316575  


Genomics

Variants

.
Variants in 4930519D14Rik
291 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:145
Count of miRNA genes:139
Interacting mature miRNAs:145
Transcripts:ENSMUST00000151471
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301255Cd4ts6_mCD4 T cell subset 6 (mouse)Not determined1316854534168684Mouse
10449140Eosn2_meosinophil differential 2 (mouse)1322131134221311Mouse
15039338Nmrs34_mNAFLD-associated magnetic resonance shift 34 (mouse)1322131134221311Mouse
1301455Bmd3_mbone mineral density 3 (mouse)Not determined13347761237477820Mouse
10045624Heal24_mwound healing/regeneration (mouse)Not determined13347761237477820Mouse
10045625Heal23_mwound healing/regeneration 23 (mouse)Not determined13347761237477820Mouse
1301367Twq1_mtestis weight QTL 1 (mouse)Not determined13361551237615672Mouse
1301733Heal3_mwound healing/regeneration 3 (mouse)Not determined13368020037680343Mouse
26884393Humsd7_mhumerus midshaft diameter 7, 16 week (mouse)13395000076048119Mouse
1558898Hpi1_mhapatic PMN infiltration 1 (mouse)Not determined13441402553101640Mouse
10402494Igmsc1_mimmunoglobulin M secreting cells 1 (mouse)Not determined131716854544918560Mouse
1301984Pbd2_mpeak bone density 2 (mouse)Not determined131718950838947406Mouse
1301880Hypt_mhypertension (mouse)Not determined131815679252156924Mouse
13463469Gssq1_mglomerulosclerosis severity QTL 1 (mouse)131906090853061050Mouse
12880423V25Dq7_mvitamin D inactive form serum level QTL 7 (mouse)131958398353583983Mouse
1301015Sysbp2_msystolic blood pressure 2 (mouse)Not determined132047761259821605Mouse
4142147Mvwf4_mmodifier of von Willebrand factor 4 (mouse)Not determined20477612112898424Mouse
1357591Tesq1_mtestis weight QTL 1 (mouse)Not determined132061551255720517Mouse
4142009Pregq3_mpregnancy QTL 3 (mouse)Not determined132061551272385189Mouse
10045618Heal17_mwound healing/regeneration 17 (mouse)Not determined132074693954747056Mouse
4142489Ath25_matherosclerosis 25 (mouse)Not determined2583652959836529Mouse
10401111Pgia40_mproteoglycan induced arthritis 40 (mouse)Not determined132791846961918560Mouse
1300710Pcd4ts2_mp-glycoprotein positive CD4 T cell subset 2 (mouse)Not determined132821044262210544Mouse
1357802Vtbt15_mvertebral trabecular bone trait 15 (mouse)Not determined132821737962217515Mouse
10045621Heal21_mwound healing/regeneration 21 (mouse)Not determined132821737962217515Mouse

Markers in Region
RH142155  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381330,620,968 - 30,621,135UniSTSGRCm38
MGSCv371330,712,837 - 30,713,004UniSTSGRCm37
Celera1330,835,074 - 30,835,241UniSTS
Whitehead_YAC13 UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000151471
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1330,799,026 - 30,808,242 (+)Ensembl
GRCm38.p6 Ensembl1330,615,043 - 30,624,259 (+)Ensembl
RefSeq Acc Id: NR_045975
RefSeq Status: PREDICTED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391330,799,026 - 30,808,241 (+)NCBI
GRCm381330,615,043 - 30,624,258 (+)ENTREZGENE
Celera1330,829,306 - 30,838,415 (+)ENTREZGENE
cM Map13 ENTREZGENE
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000086263 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000151471 ENTREZGENE
MGD MGI:1922340 ENTREZGENE
NCBI Gene 75090 ENTREZGENE
PhenoGen 4930519D14Rik PhenoGen
RNAcentral URS000075A164 RNACentral