4930522N08Rik (RIKEN cDNA 4930522N08 gene) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: 4930522N08Rik (RIKEN cDNA 4930522N08 gene) Mus musculus
Analyze
Symbol: 4930522N08Rik
Name: RIKEN cDNA 4930522N08 gene
RGD ID: 1609167
MGI Page MGI
Description:
Type: protein-coding (Ensembl: lncRNA)
Previously known as: hypothetical protein LOC75094; uncharacterized protein LOC75094
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
NCBI Annotation Information: Genome Annotation Status: not in current annotation release
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39 Ensembl599,830,858 - 99,832,893 (+)EnsemblGRCm39 Ensembl
GRCm38599,682,999 - 99,685,034 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl599,682,999 - 99,685,034 (+)EnsemblGRCm38mm10GRCm38
MGSCv375100,112,018 - 100,114,053 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera597,002,920 - 97,004,955 (+)NCBICelera
Cytogenetic Map5E4NCBI
cM Map548.46NCBI


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:106
Count of miRNA genes:105
Interacting mature miRNAs:105
Transcripts:ENSMUST00000031274
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000031274
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl599,830,858 - 99,832,893 (+)Ensembl
GRCm38.p6 Ensembl599,682,999 - 99,685,034 (+)Ensembl
RefSeq Acc Id: XM_003085449   ⟹   XP_003085497
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38599,682,999 - 99,685,034 (+)ENTREZGENE
MGSCv375100,112,018 - 100,114,053 (+)RGD
cM Map5 ENTREZGENE
RefSeq Acc Id: XM_003086492   ⟹   XP_003086540
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
Celera597,002,920 - 97,004,955 (+)RGD
Protein Sequences
GenBank Protein BAB30010 (Get FASTA)   NCBI Sequence Viewer  
  EDL20319 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_003086540   ⟸   XM_003086492
RefSeq Acc Id: XP_003085497   ⟸   XM_003085449

Promoters
RGD ID:15092897
Promoter ID:EPDNEWNC_M813
Type:single initiation site
Name:4930522N08Rik_1
Description:RIKEN cDNA 4930522N08 gene [Source:MGISymbol;Acc:MGI:1922344]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38599,682,995 - 99,683,055EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000029331 Ensembl
MGD MGI:1922344 ENTREZGENE
NCBI Gene 75094 ENTREZGENE
PhenoGen 4930522N08Rik PhenoGen
UniProt Q9D526_MOUSE UniProtKB/TrEMBL