A230028O05Rik (RIKEN cDNA A230028O05 gene) - Rat Genome Database

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Gene: A230028O05Rik (RIKEN cDNA A230028O05 gene) Mus musculus
Analyze
Symbol: A230028O05Rik
Name: RIKEN cDNA A230028O05 gene
RGD ID: 1608953
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC319487
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391624,878,389 - 24,887,808 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1624,878,123 - 24,887,808 (+)EnsemblGRCm39 Ensembl
GRCm381625,059,639 - 25,069,058 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1625,059,639 - 25,069,058 (+)EnsemblGRCm38mm10GRCm38
MGSCv371625,059,725 - 25,069,144 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1625,610,244 - 25,619,694 (+)NCBICelera
Cytogenetic Map16B1NCBI
cM Map1616.79NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:14610273   PMID:16141072   PMID:16141073   PMID:21267068  


Genomics

Variants

.
Variants in A230028O05Rik
275 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:54
Count of miRNA genes:54
Interacting mature miRNAs:54
Transcripts:ENSMUST00000181655
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301384Dice1_mdetermination of interleukin 4 commitment 1 (mouse)Not determined16128434358Mouse
10402497Lmr23_mleishmaniasis resistance 23 (mouse)Not determined16129674200Mouse
1301559Bbaa19_mB.burgdorferi-associated arthritis 19 (mouse)Not determined16130066977Mouse
10412289Ppsl_mplasma P-selectin levels (mouse)Not determined16130814572Mouse
27095908Scvln7_msacral vertebrae length 2, 5 week (mouse)16331786439820362Mouse
27226768Tibl9_mtibia length 9, 5 week (mouse)16331786451420363Mouse
27226785Feml12_mfemur length 12, 5 week (mouse)16331786464620363Mouse
26884432Zlq7_mzygomatic length QTL 7, 10 week (mouse)16381786464620363Mouse
38501069Tip4_mtuberculosis immunophenotype 4, IFN-g level (mouse)16431786444520363Mouse
1301443Mopkd2_mmodifier of polycystic kidney disease progression 2 (mouse)Not determined16464631438646414Mouse
1300656Bgeq15_mbody growth early QTL 15 (mouse)Not determined16577525239775440Mouse
1301945Skl7_mskeletal size (tail length) 7 (mouse)Not determined16577525239775440Mouse
1300943Skts9_mskin tumor susceptibility 9 (mouse)Not determined16577525239775440Mouse
1300987Skull23_mskull morphology 23 (mouse)Not determined16577525239775440Mouse
4141010Bbq1_mbrain and behavior QTL 1 (mouse)Not determined16647700935021216Mouse
1357763Lp1_mlymphocyte proliferation 1 (mouse)Not determined16654297965466552Mouse
4142460Nilac10_mnicotine induced locomotor activity 10 (mouse)Not determined16713690629225471Mouse
11251724Ewc6_methanol withdrawal and consumption 6 (mouse)16822605242226052Mouse
26884376Skwq4_mskull length QTL 4, 5 week (mouse)16841786490896888Mouse
10043978Obq35_mobesity QTL 35 (mouse)Not determined16988163143881631Mouse
1301086Lprm5_mlymphoproliferation modifier 5 (mouse)Not determined161184882445848923Mouse
1301841Lrnx9_mlearning-contextual 9 (mouse)Not determined161222536046225471Mouse
10045614Rapop6_mradiation-induced apoptosis 6 (mouse)Not determined161480292148803032Mouse
4142236Pstc4_mperiosteal circumference 4 (mouse)Not determined161552290949523112Mouse
11565820Vasr1_mvariability in acoustic startle response 1 (mouse)161969865726368664Mouse
1357517Bwtn1_mbody weight at necropsy 1 (mouse)Not determined162001932985600826Mouse
1300534Bmd15_mbone mineral density 15 (mouse)Not determined162193838355938574Mouse
4141179Ipng3_mimprinted postnatal growth 3 (mouse)Not determined2277525257594076Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000181655
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1624,878,389 - 24,887,808 (+)Ensembl
GRCm38.p6 Ensembl1625,059,639 - 25,069,058 (+)Ensembl
RefSeq Acc Id: ENSMUST00000245038
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1624,878,123 - 24,878,575 (+)Ensembl
RefSeq Acc Id: NR_040374
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391624,878,389 - 24,887,808 (+)NCBI
GRCm381625,059,639 - 25,069,058 (+)ENTREZGENE
Celera1625,610,244 - 25,619,694 (+)ENTREZGENE
cM Map16 ENTREZGENE
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000096960 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000181655 ENTREZGENE
MGD MGI:2442126 ENTREZGENE
NCBI Gene 319487 ENTREZGENE
PhenoGen A230028O05Rik PhenoGen
RNAcentral URS000075D714 RNACentral