4930520O04Rik (RIKEN cDNA 4930520O04 gene)

Gene: 4930520O04Rik (RIKEN cDNA 4930520O04 gene) Mus musculus

Analyze

Symbol:

4930520O04Rik

Name:

RIKEN cDNA 4930520O04 gene

RGD ID:

1608688

MGI Page

MGI

Description:

Type:

ncrna (Ensembl: lncRNA)

RefSeq Status:

VALIDATED

Previously known as:

hypothetical protein LOC75116

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	114,197,392 - 114,206,306 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	114,197,371 - 114,206,297 (+)	Ensembl		GRCm39 Ensembl
GRCm38	9	114,368,324 - 114,377,238 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	114,368,303 - 114,377,229 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	114,277,980 - 114,286,355 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	9	114,277,537 - 114,278,280 (+)	NCBI		MGSCv36	mm8
Celera	9	114,840,298 - 114,848,665 (+)	NCBI		Celera
Cytogenetic Map	9	F3	NCBI
cM Map	9	64.39	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

Cellular Component

cellular_component (ND)

Molecular Function

molecular_function (ND)

References

Additional References at PubMed

PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:12477932	PMID:16141072	PMID:16141073	PMID:24200680	PMID:27899360

Genomics

Variants

Variants in 4930520O04Rik
174 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	427
Count of miRNA genes:	332
Interacting mature miRNAs:	362
Transcripts:	ENSMUST00000124664, ENSMUST00000131898, ENSMUST00000147689
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4141833	W10q13_m	weight 10 weeks QTL 13 (mouse)			Not determined			63239711	120191934	Mouse
4141545	Tailaq2_m	tail length adjusted QTL 2 (mouse)			Not determined			63239711	120191934	Mouse
1357635	Splq4_m	spleen weight QTL 4 (mouse)			Not determined		9	63239711	120191934	Mouse
1302065	El1_m	epilepsy 1 (mouse)			Not determined		9	75682646	114303447	Mouse
10054492	El7_m	epilepsy 7 (mouse)			Not determined		9	75682646	114303447	Mouse
1301732	Char1_m	P. chabaudi malaria resistance QTL 1 (mouse)			Not determined		9	81680321	115680445	Mouse
10766454	Char10_m	P. chabaudi malaria resistance QTL 10 (mouse)					9	82792386	116792481	Mouse
1300884	Sluc11_m	susceptibility to lung cancer 11 (mouse)			Not determined		9	82792386	116792481	Mouse
1357461	Idd2_m	insulin dependent diabetes susceptibility 2 (mouse)			Not determined		9	82792386	116792481	Mouse
1301487	Nociq1_m	nociceptive sensitivity inflammatory QTL 1 (mouse)			Not determined		9	84406017	118406120	Mouse
1300549	Bbaa17_m	B. burgdorferi-associated arthritis 17 (mouse)			Not determined		9	86107600	120107729	Mouse
1302103	Dob2_m	dietary obesity 2 (mouse)			Not determined		9	86121898	120118690	Mouse
11251716	Siim2_m	stress induced immobility 2 (mouse)					9	86625682	120625682	Mouse
12880422	V25Dq6_m	vitamin D inactive form serum level QTL 6 (mouse)					9	87677199	121677199	Mouse
10412242	Alpq8_m	alcohol preference QTL 8 (mouse)			Not determined		9	89162124	123162124	Mouse
1301649	Psl1_m	promotion susceptibility QTL 1 (mouse)			Not determined		9	89289476	123289595	Mouse
18182932	Metl3_m	metabolite locus 3, N-acetylglutamate (mouse)					9	89440541	123440541	Mouse
1357657	Pymr_m	Plasmodium yoelli malaria resistance (mouse)			Not determined		9	89859058	118767089	Mouse
12910770	Splic1_m	spleen iron content 1 (mouse)					9	91291078	124359700	Mouse
12910772	Lvic6_m	liver iron content 6 (mouse)					9	91291078	124359700	Mouse
12910773	Splic3_m	spleen iron content 3 (mouse)					9	91291078	124359700	Mouse
1558767	Skmw11_m	skeletal muscle weight 11 (mouse)			Not determined		9	91518283	124359700	Mouse
13463474	Hbbcq5_m	hemoglobin concentration QTL 5 (mouse)					9	91518283	124359700	Mouse
13463475	Hctq7_m	hematocrit QTL 7 (mouse)					9	91518283	124359700	Mouse
13463477	Rbc9_m	red blood cell count 9 (mouse)					9	91518283	124359700	Mouse
13463478	Mchq18_m	mean corpuscular hemoglobin QTL 18 (mouse)					9	91518283	124359700	Mouse
13463480	Mchcq2_m	mean corpuscular hemoglobin concentration QTL 2 (mouse)					9	91518283	124359700	Mouse
12904937	Edlmmq9_m	extensor digitorum longus muscle mass QTL 9 (mouse)					9	91560372	124359700	Mouse
12904947	Tammq7_m	tibialis anterior muscle mass QTL 7 (mouse)					9	91560372	124359700	Mouse
12904961	Gmmq7_m	gastrocnemius muscle mass QTL 7 (mouse)					9	91560372	124359700	Mouse
1301484	Bwq6_m	body weight (mouse)			Not determined		9	93591658	124359700	Mouse
1302001	Bdln5_m	body length 5 (mouse)			Not determined		9	93591658	124359700	Mouse
14746992	Manh67_m	mandible shape 67 (mouse)					9	93865836	124359700	Mouse
11537364	Cnes5_m	C. neoformans susceptibility locus 5 (mouse)					9	96746658	124359700	Mouse
1301297	Lcho1_m	liver cholesterol 1 (mouse)			Not determined		9	100889929	124359700	Mouse
1357648	Obq18_m	obesity QTL 18 (mouse)			Not determined		9	101829255	124359700	Mouse
1357627	Tgq2_m	triglyceride QTL 2 (mouse)			Not determined		9	101829255	124359700	Mouse
10412290	Pvacm1l_m	plasma vascular cell adhesion molecule 1 levels (mouse)			Not determined		9	103118511	124359700	Mouse
12879896	Berr3_m	berghei resistance locus 3 (mouse)					9	103118511	124359700	Mouse
1301789	Pbwg4_m	postnatal body weight growth 4 (mouse)			Not determined		9	103118511	124359700	Mouse
13515058	Adip20d_m	adiposity 20d (mouse)					9	108744078	118744078	Mouse

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NR_040383	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_040384	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC156499	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK015855	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK040958	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC020150	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BF019815	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	KY468233	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	KY468234	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	KY468235	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	KY468236	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSMUST00000124664

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	9	114,197,371 - 114,206,297 (+)	Ensembl
GRCm38.p6 Ensembl	9	114,368,303 - 114,377,229 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000131898

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	9	114,197,484 - 114,200,232 (+)	Ensembl
GRCm38.p6 Ensembl	9	114,368,416 - 114,371,164 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000147689

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	9	114,197,392 - 114,205,514 (+)	Ensembl
GRCm38.p6 Ensembl	9	114,368,324 - 114,376,446 (+)	Ensembl

RefSeq Acc Id:

NR_040383

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	9	114,197,392 - 114,206,306 (+)	NCBI
GRCm38	9	114,368,324 - 114,377,238 (+)	ENTREZGENE
Celera	9	114,839,760 - 114,848,666 (+)	ENTREZGENE
cM Map	9		ENTREZGENE

Sequence:

show sequence

AAAAGACCCACAGCTTTTCCACGCGGTGCTTCAGGAACGGCCGCGCCCCCACGTGCTCTCGGGT
GCAATCCGTAACAGAAGGAAGGAAGGACAGCCTCGCTCTGACTGCACCCTAAACTATAAAGGGA
CCTGCGCGGAAAGCTGAGGGTTCTCTTTGCGCTATGAAGGGGTGCCCAAAGCATCCGAGAGAAC
TCGTCACAGAAAATAACTTGATTAAAACCTGACTCTTTTAAAAGTGGCCATGCGGACCAGGACG
GTGAACACTTCCCTGACCATGTCTTACTCAGAGCCTTAAGAAGAGTTGGAGGTGGAGCGGAGCT
GTGGGGAGGGGCCCAGTGTCTCTCAGAACTTCTCATCCTCCGGGCTTCCCTAGGATGCAATGGG
TCAGAGCTCCCAGATCTCTTATGCCTCCAAACACATTGATTCCCCCCAACTTTTTTACAACGGA
TTTCCCAGTTCCTACCAATCTCATCTCTCTAAGTAAATAAGAAGGGGTTTCTACTGATGGCTTT
CCCATGGCCCGGCTTCATGCTGCTCCTGTCAGGATGGATCAGGAAAGGAGCTGGACCTGAAGAT
GAATCTACCATACAGTAGGTAGAGGCACGTGACAAGCACGCGCCAAGTCCTAAGCTGATGCCCG
CTATCAGAATTAACTGGGTGTGGTGGTGCGTGTTTGTAATGCCACACTTGAGAGGTCCCAGCAG
GATGGCCAGAACTTCAGCTCAGCTACAGTGCAAGCTGGAGGCCAACCTGTGCTACATGAGACGC
TGTCTAAATGACAAAACACATCAAACAGACAAACAAAAGGGCTAAGGTTGGCTAAGGGAGATCG
AGTCAGAAAACCAGCTTGCATGGAGAATGCGCTCCTGGAAGCAAGGATATCGTTTACAGCCATA
AAATGATAATAACCTGGTAGGAAAACGGGGTGGGATTTATAAGTGTCTTCAACATGCAGAACGA
GTAAAACTCACTACACTTCTCAAAAATGGCAGTGTGGGGACCTTTGAGAGGGGCTCAGTGGGTG
AAGGAGTTTGCTATGGAGCCAAATGACCTGAGTTCAAGCCCCACCACCCACAAGGTAGAAGGAA
AGGAACAACTCCCGCAAGCTGTCTTCTGACCTCCGTGGTGGTACTATAGCACGCCTTTGCCCCT
ACCCCACACAAATAAGAAAACAACAAACAAATAAACAAATAAATATAAATAAAACCAAAGAAAG
G

hide sequence

RefSeq Acc Id:

NR_040384

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	9	114,197,930 - 114,206,306 (+)	NCBI
GRCm38	9	114,368,862 - 114,377,238 (+)	NCBI
Celera	9	114,839,760 - 114,848,666 (+)	ENTREZGENE
cM Map	9		ENTREZGENE

Sequence:

show sequence

TCTTAACATCATCAAAGCAGTTGCAAAAAGATACCAAGATGAAGGGGTGCCCAAAGCATCCGAG
AGAACTCGTCACAGAAAATAACTTGATTAAAACCTGACTCTTTTAAAAGTGGCCATGCGGACCA
GGACGGTGAACACTTCCCTGACCATGTCTTACTCAGAGCCTTAAGAAGAGTTGGAGGTGGAGCG
GAGCTGTGGGGAGGGGCCCAGTGTCTCTCAGAACTTCTCATCCTCCGGGCTTCCCTAGGATGCA
ATGGGTCAGAGCTCCCAGATCTCTTATGCCTCCAAACACATTGATTCCCCCCAACTTTTTTACA
ACGGATTTCCCAGTTCCTACCAATCTCATCTCTCTAAGTAAATAAGAAGGGGTTTCTACTGATG
GCTTTCCCATGGCCCGGCTTCATGCTGCTCCTGTCAGGATGGATCAGGAAAGGAGCTGGACCTG
AAGATGAATCTACCATACAGTAGGTAGAGGCACGTGACAAGCACGCGCCAAGTCCTAAGCTGAT
GCCCGCTATCAGAATTAACTGGGTGTGGTGGTGCGTGTTTGTAATGCCACACTTGAGAGGTCCC
AGCAGGATGGCCAGAACTTCAGCTCAGCTACAGTGCAAGCTGGAGGCCAACCTGTGCTACATGA
GACGCTGTCTAAATGACAAAACACATCAAACAGACAAACAAAAGGGCTAAGGTTGGCTAAGGGA
GATCGAGTCAGAAAACCAGCTTGCATGGAGAATGCGCTCCTGGAAGCAAGGATATCGTTTACAG
CCATAAAATGATAATAACCTGGTAGGAAAACGGGGTGGGATTTATAAGTGTCTTCAACATGCAG
AACGAGTAAAACTCACTACACTTCTCAAAAATGGCAGTGTGGGGACCTTTGAGAGGGGCTCAGT
GGGTGAAGGAGTTTGCTATGGAGCCAAATGACCTGAGTTCAAGCCCCACCACCCACAAGGTAGA
AGGAAAGGAACAACTCCCGCAAGCTGTCTTCTGACCTCCGTGGTGGTACTATAGCACGCCTTTG
CCCCTACCCCACACAAATAAGAAAACAACAAACAAATAAACAAATAAATATAAATAAAACCAAA
GAAAGG

hide sequence

Promoters

RGD ID:

6845093

Promoter ID:

MM_KWN:59014

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

BoneMarrow_0Hour, ES_Cell

Transcripts:

AK016862_4933421H06RIK, OTTMUST00000084596, OTTMUST00000084597, OTTMUST00000084598, UC009RXF.1

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	9	114,277,171 - 114,277,671 (+)	MPROMDB

RGD ID:

8671104

Promoter ID:

EPDNEW_M13582

Type:

initiation region

Name:

4930520O04Rik_2

Description:

Mus musculus RIKEN cDNA 4930520O04 gene , transcript variant2, long non-coding RNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_M13583

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	9	114,368,258 - 114,368,318	EPDNEW

RGD ID:

15093675

Promoter ID:

EPDNEWNC_M1589

Type:

initiation region

Name:

4930520O04Rik_1

Description:

RIKEN cDNA 4930520O04 gene [Source:MGISymbol;Acc:MGI:1922366]

SO ACC ID:

SO:0000170

Source:

EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	9	114,368,258 - 114,368,318	EPDNEWNC

RGD ID:

8671106

Promoter ID:

EPDNEW_M13583

Type:

initiation region

Name:

4930520O04Rik_1

Description:

Mus musculus RIKEN cDNA 4930520O04 gene , transcript variant2, long non-coding RNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_M13582

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	9	114,368,474 - 114,368,534	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000074039	Ensembl, ENTREZGENE
Ensembl Transcript	ENSMUST00000124664	ENTREZGENE
MGD	MGI:1922366	ENTREZGENE
NCBI Gene	75116	ENTREZGENE
PhenoGen	4930520O04Rik	PhenoGen
RNAcentral	URS000075BEB8	RNACentral
	URS000075C99A	RNACentral

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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