4930544D05Rik (RIKEN cDNA 4930544D05 gene) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: 4930544D05Rik (RIKEN cDNA 4930544D05 gene) Mus musculus
Analyze
Symbol: 4930544D05Rik
Name: RIKEN cDNA 4930544D05 gene
RGD ID: 1608441
MGI Page MGI
Description: Orthologous to human C17orf107 (chromosome 17 open reading frame 107); INTERACTS WITH sodium arsenite (ortholog); valproic acid (ortholog).
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: hypothetical protein LOC668433; uncharacterized protein C17orf107 homolog; uncharacterized protein LOC668433
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391170,506,600 - 70,507,718 (+)NCBIGRCm39mm39
GRCm39 Ensembl1170,506,674 - 70,507,716 (+)Ensembl
GRCm381170,615,589 - 70,616,892 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1170,615,848 - 70,616,890 (+)EnsemblGRCm38mm10GRCm38
MGSCv371170,429,396 - 70,430,392 (+)NCBIGRCm37mm9NCBIm37
MGSCv361170,432,105 - 70,433,072 (+)NCBImm8
Celera1178,164,215 - 78,165,211 (+)NCBICelera
Cytogenetic Map11B3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
1. RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073  


Genomics

Comparative Map Data
4930544D05Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391170,506,600 - 70,507,718 (+)NCBIGRCm39mm39
GRCm39 Ensembl1170,506,674 - 70,507,716 (+)Ensembl
GRCm381170,615,589 - 70,616,892 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1170,615,848 - 70,616,890 (+)EnsemblGRCm38mm10GRCm38
MGSCv371170,429,396 - 70,430,392 (+)NCBIGRCm37mm9NCBIm37
MGSCv361170,432,105 - 70,433,072 (+)NCBImm8
Celera1178,164,215 - 78,165,211 (+)NCBICelera
Cytogenetic Map11B3NCBI
C17orf107
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl174,899,418 - 4,902,934 (+)EnsemblGRCh38hg38GRCh38
GRCh38174,899,536 - 4,902,934 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37174,802,831 - 4,806,229 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36174,743,492 - 4,747,006 (+)NCBINCBI36hg18NCBI36
Celera174,817,829 - 4,821,108 (+)NCBI
Cytogenetic Map17p13.2NCBI
HuRef174,691,083 - 4,694,362 (+)NCBIHuRef
CHM1_1174,812,225 - 4,815,504 (+)NCBICHM1_1
LOC687707
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21055,332,067 - 55,333,199 (+)NCBI
Rnor_6.0 Ensembl1057,239,993 - 57,240,947 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01057,239,993 - 57,240,948 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01056,985,536 - 56,986,491 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41057,498,225 - 57,499,180 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1054,477,909 - 54,478,864 (+)NCBICelera
Cytogenetic Map10q24NCBI
LOC102020788
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546710,313,769 - 10,314,694 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546710,313,693 - 10,314,724 (+)NCBIChiLan1.0ChiLan1.0
C17H17orf107
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1174,934,173 - 4,935,521 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl174,934,173 - 4,935,528 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0174,945,885 - 4,947,235 (+)NCBIMhudiblu_PPA_v0panPan3
LOC102153605
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1531,705,484 - 31,706,675 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CUNH17orf107
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049366772,811,199 - 2,812,425 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CUNH17orf107
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1164,372,060 - 4,373,156 (+)NCBI
ChlSab1.1 Ensembl164,372,262 - 4,373,024 (+)Ensembl
CUNH17orf107
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247868,765,720 - 8,766,967 (+)NCBI

Position Markers
J04698  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381170,614,632 - 70,614,793UniSTSGRCm38
MGSCv371170,428,134 - 70,428,295UniSTSGRCm37
Celera1178,162,953 - 78,163,114UniSTS
Cytogenetic Map11B4UniSTS
Cytogenetic Map11B3UniSTS
cM Map1142.0UniSTS
Whitehead_YAC11 UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11330000072800000Mouse
13208559Wght10_mweight 10 (mouse)11400000089000000Mouse
13208558Lgth12_mbody length 12 (mouse)11400000095000000Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11693027789128908Mouse
1357859Lvrq7_mliver weight QTL 7 (mouse)Not determined1112318637118131898Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112318637118131898Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1917420497007000Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112185736495990405Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113600000085000000Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113639175083590530Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113661246070618665Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113672273870723028Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113719011571190238Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113812528972125383Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114236579176365904Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114236579176365904Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114473921176963931Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44739211113167183Mouse
4141000Nidd3_mnon-insulin-dependent diabetes mellitus 3 (mouse)Not determined4515120179151308Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114527504680087498Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114581775489927907Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114629434180294436Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114642858180428696Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115018736584187585Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115260355986603559Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115349976287499911Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115423592683842826Mouse
4141875Etax9_methanol induced ataxia 9 (mouse)Not determined5539415972319101Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156973201114267131Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115786383491863932Mouse
10053682Eae45_mexperimental allergic encephalomyelitis susceptibility 45 (mouse)Not determined115859972974863932Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15861720487804412Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5882844085175703Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116179599488808902Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116226517996265327Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162700000109500000Mouse
1301999Lmr15_mleishmaniasis resistance 15 (mouse)Not determined116342858181939647Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116342858194173092Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116493951098939647Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116493951098939647Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116493951098939647Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166842594100842826Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166842594100842826Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66842594100842826Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166842594100842826Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166842594100842826Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166842594100842826Mouse
4142316Ity2b_mimmunity to S. typhimurium 2b (mouse)Not determined116718736579923086Mouse
27226783Tibl5_mtibia length 5, 5 week (mouse)1168300000102000000Mouse
36049778Ars6_mantibody response to SARS-CoV 6, day 15, IgM (mouse)116910000072600000Mouse
36049779Ars7_mantibody response to SARS-CoV 7, day 29, IgG1 (mouse)116910000072600000Mouse
36049784Ars8_mantibody response to SARS-CoV 8, day 29, IgG2a+IgG2c (mouse)116910000072600000Mouse
36049785Ars9_mantibody response to SARS-CoV 9, day 29, IgM (mouse)116910000072600000Mouse
36049786Ars10_mantibody response to SARS-CoV 10, 4 days post-rechallenge, IgG2a+IgG2c (mouse)116910000072600000Mouse
36049787Ars11_mantibody response to SARS-CoV 11, 4 days post-rechallenge, IgM (mouse)116910000072600000Mouse
36049788Ars1_mantibody response to SARS-CoV 1, day 7, IgG1 (mouse)116910000072600000Mouse
36049789Ars2_mantibody response to SARS-CoV 2, day 7, IgG2a+IgG2c (mouse)116910000072600000Mouse
36049790Ars3_mantibody response to SARS-CoV 3, day 7, IgG2b (mouse)116910000072600000Mouse
36049791Ars4_mantibody response to SARS-CoV 4, day 7, IgG3 (mouse)116910000072600000Mouse
36049792Ars5_mantibody response to SARS-CoV 5, day 7, IgM (mouse)116910000072600000Mouse
35673314Ari2_mantibody response to influenza 2, day 10, IgG3 (mouse)116910000072600000Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:601
Count of miRNA genes:287
Interacting mature miRNAs:327
Transcripts:ENSMUST00000125387, ENSMUST00000135865, ENSMUST00000144960, ENSMUST00000180052
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000125387
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1170,615,894 - 70,616,870 (+)Ensembl
RefSeq Acc Id: ENSMUST00000135865   ⟹   ENSMUSP00000135933
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1170,615,897 - 70,616,890 (+)Ensembl
RefSeq Acc Id: ENSMUST00000144960   ⟹   ENSMUSP00000136077
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1170,615,910 - 70,616,877 (+)Ensembl
RefSeq Acc Id: ENSMUST00000180052   ⟹   ENSMUSP00000137259
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1170,615,848 - 70,616,875 (+)Ensembl
RefSeq Acc Id: NM_001145537   ⟹   NP_001139009
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391170,506,720 - 70,507,716 (+)NCBI
GRCm381170,615,894 - 70,616,890 (+)NCBI
MGSCv371170,429,396 - 70,430,392 (+)RGD
Celera1178,164,215 - 78,165,211 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006533966   ⟹   XP_006534029
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391170,506,600 - 70,507,718 (+)NCBI
GRCm381170,615,589 - 70,616,892 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001139009 (Get FASTA)   NCBI Sequence Viewer  
  XP_006534029 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001139009   ⟸   NM_001145537
- UniProtKB: J3QJW4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006534029   ⟸   XM_006533966
- Peptide Label: isoform X1
- UniProtKB: J3QK56 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000136077   ⟸   ENSMUST00000144960
RefSeq Acc Id: ENSMUSP00000135933   ⟸   ENSMUST00000135865
RefSeq Acc Id: ENSMUSP00000137259   ⟸   ENSMUST00000180052

Promoters
RGD ID:6821768
Promoter ID:MM_KWN:8235
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   Spleen
Transcripts:NM_001145537,   OTTMUST00000013643,   OTTMUST00000013644,   OTTMUST00000013661,   OTTMUST00000013662,   OTTMUST00000013663
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361170,428,706 - 70,429,992 (+)MPROMDB
RGD ID:8675340
Promoter ID:EPDNEW_M15701
Type:initiation region
Name:4930544D05Rik_1
Description:Mus musculus RIKEN cDNA 4930544D05 gene , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381170,615,897 - 70,615,957EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2148639 AgrOrtholog
Ensembl Genes ENSMUSG00000087279 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000135933 UniProtKB/TrEMBL
  ENSMUSP00000136077 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000137259 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000135865 UniProtKB/TrEMBL
  ENSMUST00000144960 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000180052 UniProtKB/TrEMBL
InterPro C17orf107 UniProtKB/TrEMBL
KEGG Report mmu:668433 UniProtKB/TrEMBL
MGD MGI:2148639 ENTREZGENE
NCBI Gene 668433 ENTREZGENE
PANTHER PTHR38506 UniProtKB/TrEMBL
Pfam DUF5536 UniProtKB/TrEMBL
PhenoGen 4930544D05Rik PhenoGen
UniProt J3KMM3_MOUSE UniProtKB/TrEMBL
  J3QJW4 ENTREZGENE, UniProtKB/TrEMBL
  J3QK56 ENTREZGENE, UniProtKB/TrEMBL