Mir188 (microRNA 188) - Rat Genome Database
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Gene: Mir188 (microRNA 188) Mus musculus
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Symbol: Mir188
Name: microRNA 188
RGD ID: 1608308
MGI Page MGI
Description: Is expressed in cranial ganglion; dorsal root ganglion; and neural retina. Orthologous to human MIR188 (microRNA 188).
Type: ncrna
RefSeq Status: PROVISIONAL
Also known as: mir-188; Mirn; Mirn188; mmu-mir-1; mmu-mir-188
RGD Orthologs
Human
Rat
Dog
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X7,114,228 - 7,114,295 (-)NCBIGRCm39mm39
GRCm39 EnsemblX7,114,228 - 7,114,295 (-)Ensembl
GRCm38X7,247,989 - 7,248,056 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX7,247,989 - 7,248,056 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X6,825,115 - 6,825,182 (-)NCBIGRCm37mm9NCBIm37
CeleraX4,223,780 - 4,223,847 (+)NCBICelera
Cytogenetic MapXA1.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References

Additional References at PubMed
PMID:12554859   PMID:15538371   PMID:16381832   PMID:17369397   PMID:17604727   PMID:20215419   PMID:20413612   PMID:21037258   PMID:21267068   PMID:22570807   PMID:25378159   PMID:25751060  
PMID:25858075   PMID:27708404   PMID:28640956   PMID:29663375   PMID:29908885   PMID:30253270   PMID:32377998  


Genomics

Comparative Map Data
Mir188
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X7,114,228 - 7,114,295 (-)NCBIGRCm39mm39
GRCm39 EnsemblX7,114,228 - 7,114,295 (-)Ensembl
GRCm38X7,247,989 - 7,248,056 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX7,247,989 - 7,248,056 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X6,825,115 - 6,825,182 (-)NCBIGRCm37mm9NCBIm37
CeleraX4,223,780 - 4,223,847 (+)NCBICelera
Cytogenetic MapXA1.1NCBI
MIR188
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 EnsemblX50,003,503 - 50,003,588 (+)EnsemblGRCh38hg38GRCh38
GRCh38X50,003,503 - 50,003,588 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37X49,768,109 - 49,768,194 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X49,654,848 - 49,654,933 (+)NCBINCBI36hg18NCBI36
CeleraX53,837,336 - 53,837,421 (+)NCBI
Cytogenetic MapXp11.23NCBI
HuRefX47,238,055 - 47,238,140 (+)NCBIHuRef
CHM1_1X49,847,897 - 49,847,982 (+)NCBICHM1_1
Mir188
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2X15,247,715 - 15,247,794 (+)NCBI
Rnor_6.0 EnsemblX16,110,270 - 16,110,349 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0X16,110,270 - 16,110,349 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X16,895,394 - 16,895,473 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
CeleraX15,327,046 - 15,327,125 (+)NCBICelera
Cytogenetic MapXq12NCBI
MIR188
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 EnsemblX42,775,058 - 42,775,143 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1X42,775,058 - 42,775,143 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1302195Pbwg10_mpostnatal body weight growth 10 (mouse)Not determinedX126335934Mouse

miRNA Target Status

Predicted Targets
Summary Value
Count of predictions:21056
Count of gene targets:9908
Count of transcripts:16600
Interacting mature miRNAs:mmu-miR-188-3p, mmu-miR-188-5p
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000083464
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 EnsemblX7,247,989 - 7,248,056 (-)Ensembl
RefSeq Acc Id: NR_029574
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X7,114,228 - 7,114,295 (-)NCBI
GRCm38X7,247,989 - 7,248,056 (-)ENTREZGENE
MGSCv37X6,825,115 - 6,825,182 (-)RGD
CeleraX4,223,780 - 4,223,847 (+)RGD
cM MapX ENTREZGENE
Sequence:

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2676852 AgrOrtholog
Ensembl Genes ENSMUSG00000065398 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000083464 ENTREZGENE
MGD MGI:2676852 ENTREZGENE
miRBase MI0000230 ENTREZGENE
NCBI Gene 387183 ENTREZGENE
PhenoGen Mir188 PhenoGen
RNAcentral URS0000083D87 RNACentral
  URS000061AB33 RNACentral
  URS000075AB10 RNACentral