Mir203 (microRNA 203) - Rat Genome Database

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Gene: Mir203 (microRNA 203) Mus musculus
Analyze
Symbol: Mir203
Name: microRNA 203
RGD ID: 1608292
MGI Page MGI
Description: Involved in several processes, including gene silencing by miRNA; intestinal epithelial cell development; and sensory perception of sound. Is expressed in naris; skin; and tooth. Orthologous to human MIR203A (microRNA 203a) and MIR203B (microRNA 203b).
Type: ncrna
RefSeq Status: PROVISIONAL
Also known as: mir-203; Mirn; Mirn203; mmu-mir-2; mmu-mir-203
RGD Orthologs
Human
Rat
Dog
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912112,097,314 - 112,097,389 (+)NCBIGRCm39mm39
GRCm39 Ensembl12112,097,314 - 112,097,389 (+)Ensembl
GRCm3812112,130,880 - 112,130,955 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12112,130,880 - 112,130,955 (+)EnsemblGRCm38mm10GRCm38
MGSCv3712113,369,091 - 113,369,166 (+)NCBIGRCm37mm9NCBIm37
Celera12113,332,813 - 113,332,888 (+)NCBICelera
Cytogenetic Map12F1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
1. RGD automated import pipeline
2. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12554859   PMID:12554860   PMID:16369549   PMID:16381832   PMID:16462742   PMID:17369397   PMID:17604727   PMID:18311128   PMID:18483491   PMID:18594913   PMID:20215419   PMID:20413612  
PMID:20548288   PMID:21037258   PMID:21267068   PMID:21307095   PMID:21822254   PMID:22753148   PMID:22842794   PMID:22846677   PMID:23175673   PMID:23190607   PMID:23296057   PMID:23522925  
PMID:23571213   PMID:23646144   PMID:24219349   PMID:24291638   PMID:24692008   PMID:24792773   PMID:24996183   PMID:25723469   PMID:26203562   PMID:26307673   PMID:26618174   PMID:26723899  
PMID:26975850   PMID:27165289   PMID:27502584   PMID:27626380   PMID:28304372   PMID:28602614   PMID:29039484   PMID:29554131   PMID:30121817   PMID:30229838   PMID:30261495   PMID:30653268  
PMID:30772517   PMID:30854680   PMID:31327757   PMID:31336140   PMID:31340209   PMID:31722792   PMID:32296071  


Genomics

Comparative Map Data
Mir203
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912112,097,314 - 112,097,389 (+)NCBIGRCm39mm39
GRCm39 Ensembl12112,097,314 - 112,097,389 (+)Ensembl
GRCm3812112,130,880 - 112,130,955 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12112,130,880 - 112,130,955 (+)EnsemblGRCm38mm10GRCm38
MGSCv3712113,369,091 - 113,369,166 (+)NCBIGRCm37mm9NCBIm37
Celera12113,332,813 - 113,332,888 (+)NCBICelera
Cytogenetic Map12F1NCBI
MIR203B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl14104,117,418 - 104,117,503 (-)EnsemblGRCh38hg38GRCh38
GRCh3814104,117,418 - 104,117,503 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh3714104,583,755 - 104,583,840 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map14q32.33NCBI
HuRef1484,763,590 - 84,763,675 (-)NCBIHuRef
CHM1_114104,522,213 - 104,522,298 (-)NCBICHM1_1
Mir3545
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.26131,199,542 - 131,199,656 (-)NCBI
Rnor_6.0 Ensembl6136,704,947 - 136,705,061 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.06136,704,947 - 136,705,061 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.06145,714,619 - 145,714,733 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera6128,752,132 - 128,752,246 (-)NCBICelera
Cytogenetic Map6q32NCBI
MIR203
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1871,774,247 - 71,774,340 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl871,774,247 - 71,774,340 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha871,283,067 - 71,283,160 (+)NCBI
ROS_Cfam_1.0872,049,450 - 72,049,543 (+)NCBI
UMICH_Zoey_3.1871,737,989 - 71,738,082 (+)NCBI
UNSW_CanFamBas_1.0871,778,683 - 71,778,776 (+)NCBI
UU_Cfam_GSD_1.0872,177,381 - 72,177,474 (+)NCBI


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226793Feml10_mfemur length 10, 5 week (mouse)1268300000113400000Mouse
4142401Egq10_mearly growth QTL 10 (mouse)Not determined80909934113419913Mouse
4141335W6q10_mweight 6 weeks QTL 10 (mouse)Not determined80909934113419913Mouse
4141610Tailaq1_mtail length adjusted QTL 1 (mouse)Not determined80909934113419913Mouse
1357701Lvrq10_mliver weight QTL 10 (mouse)Not determined1280909934113419913Mouse
39128213Lwq23_mliver weight QTL 10 (mouse)1280909934113419913Mouse
13524849Ppiq11a_mprepulse inhibition QTL 11a (mouse)1281022884115022884Mouse
13524846Ppiq11_mprepulse inhibition QTL 11 (mouse)1282700137116700137Mouse
1301879Insq10_minsulin QTL 10 (mouse)Not determined1283565816117565965Mouse
1301492Dbsty3_mdiabesity 3 (mouse)Not determined1283565816117565965Mouse
1300883Ath21_matherosclerosis 21 (mouse)Not determined1285995320119995424Mouse
10412156Nociq3_mnociceptive sensitivity inflammatory QTL 3 (mouse)Not determined1286349301114868033Mouse
4142007Chlq17_mcirculating hormone level QTL 17 (mouse)Not determined1288086615120129022Mouse
1300545Lifespan3_mlife span 3 (mouse)Not determined1288086615120129022Mouse
1301308Prdt4_mprion disease incubation time 4 (mouse)Not determined1288342095120129022Mouse
5491194Mobq3_mmultigenic obesity QTL 3 (mouse)Not determined1289697812120129022Mouse
1301836Heal5_mwound healing/regeneration 5 (mouse)Not determined1289972772120129022Mouse
1301922Bbaa6_mB.burgdorferi-associated arthritis 6 (mouse)Not determined1290342009120129022Mouse
10402491Dipa4_mdrug induced psychomotor activation 4 (mouse)Not determined1291256256120129022Mouse
12910532Nrq10a_mnoise-induced hearing loss resistant QTL 10a (mouse)1292783591120129022Mouse
12910533Nrq10_mnoise-induced hearing loss resistant QTL 10 (mouse)1292783591120129022Mouse
1357463Vtbt14_mvertebral trabecular bone trait 14 (mouse)Not determined1292969663120129022Mouse
1300973Abmm_mantibody mediated myocarditis (mouse)Not determined1293298027120129022Mouse
1302177Dps2_mdelta power in slow-wave sleep 2 (mouse)Not determined1294179630120129022Mouse
1302138Im6_mimmunoregulatory 6 (mouse)Not determined1296896717120129022Mouse
1301269Sluc12_msusceptibility to lung cancer 12 (mouse)Not determined1296896717120129022Mouse
10412075Nils1_mneointima lesion size 1 (mouse)Not determined12102060930120129022Mouse
4141297Plyid_mPolymeric IgA dominance (mouse)Not determined109217459115921502Mouse
1558957Igan4_mIgA nephropathy 4 (mouse)Not determined12109783591119061214Mouse
15092085Igly2_mIgG glycosylation 2, GP14 (mouse)12111770863121233193Mouse

miRNA Target Status

Confirmed Targets
Gene TargetMature miRNAMethod NameResult TypeData TypeSupport TypePMID
Trp63mmu-miR-203-3pMirtarbaseexternal_infoLuciferase reporter assay//qRT-PCR//Western blotFunctional MTI18311128
Trp63mmu-miR-203-3pMirtarbaseexternal_infoLuciferase reporter assay//Western blotFunctional MTI20216554
Zfp281mmu-miR-203-3pMirtarbaseexternal_infoLuciferase reporter assayFunctional MTI18311128

Predicted Targets
Summary Value
Count of predictions:25308
Count of gene targets:10069
Count of transcripts:16820
Interacting mature miRNAs:mmu-miR-203-3p, mmu-miR-203-5p
Prediction methods:Microtar, Miranda, Pita, Pita,Targetscan, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000083640
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl12112,130,880 - 112,130,955 (+)Ensembl
RefSeq Acc Id: NR_029590
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3912112,097,314 - 112,097,389 (+)NCBI
GRCm3812112,130,880 - 112,130,955 (+)ENTREZGENE
MGSCv3712113,369,091 - 113,369,166 (+)RGD
Celera12113,332,813 - 113,332,888 (+)RGD
cM Map12 ENTREZGENE
Sequence:
Promoters
RGD ID:8679370
Promoter ID:EPDNEW_M17716
Type:multiple initiation site
Name:Mir203_1
Description:Mus musculus microRNA 203 , microRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3812112,130,782 - 112,130,842EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2676878 AgrOrtholog
Ensembl Genes ENSMUSG00000065574 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000083640 ENTREZGENE
MGD MGI:2676878 ENTREZGENE
miRBase MI0000246 ENTREZGENE
NCBI Gene 387199 ENTREZGENE
PhenoGen Mir203 PhenoGen
RNAcentral URS000024B126 RNACentral
  URS00004DA9DB RNACentral
  URS000075A359 RNACentral